Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1661 ATGGATCTTCAAAGGCAAGAGCCATGCCCTTCAGAAAGCTTGAACATCATCACATTTTCAGATACTATGCCATGCCAAAAATCTTCCATAGACACTCCAAAAAAGAGGAATCACACAGAAAGTGAAGATCAAAAACACCCACATGACTCAATTCCTCGTGTTTTACTAGATCTAAGTCTCTCCAACAAGGATTCAGGTGATGATGACTCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCATACGAATTTCTCTGAAAATTCATCAGAGTCTAGTCAGGGAAATGAACTGGATCCCCGGGTCTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCACTTGGGGGACACCAGAATGCACACAAACGTGAAAGAACTTTAGCAAGAAGAGGATACAAAGCAGGTGCAGCAGATTTTGGACACACCTACTCCACCATGCCTTTTCTTCCTTCCCATGGCTTATACAACAAATCACTTGGAATTCAGGTTCATGCCATGATTAACAAACCTTCTCATCAAACACCCTTTTTCGGGTTGTGCCATTCCAAAGGGTGGCAGAGGCAGCCTTTGGATTCACAACCAGCAATTGGAAATTTTCGTGTGGTGGCAGAAACTGAGTCATCCTTGGCTGATAGTGTTCCAAAGTTAGGCAAGTTTTCCACAAGGCTGGTGTCAGAGGGATTTGGAGGTTTCTGCTTTGGTAGCATTACTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 777 0.4286 MDLQRQEPCPSESLNIITFSDTMPCQKSSIDTPKKRNHTESEDQKHPHDSIPRVLLDLSLSNKDSGDDDSKPELNLLNCFHTNFSENSSESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSTMPFLPSHGLYNKSLGIQVHAMINKPSHQTPFFGLCHSKGWQRQPLDSQPAIGNFRVVAETESSLADSVPKLGKFSTRLVSEGFGGFCFGSITHLKSKQEKLQKLDLSLKL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1661 258 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Pvu10g1661 258 Gene3D Classic Zinc Finger 80 141 - -
Pvu10g1661 258 MobiDBLite consensus disorder prediction 8 30 - -
Pvu10g1661 258 MobiDBLite consensus disorder prediction 1 53 - -
Pvu10g1661 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Pvu10g1661 258 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Pvu10g1661 258 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 36 258 - -
Pvu10g1661 258 MobiDBLite consensus disorder prediction 31 52 - -
Pvu10g1661 258 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 36 258 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1661 Pvu-Chr10 42836960 42838070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1661 1 258 C2H2 Transcription Factor Family AT5G10970 38.351 3.32e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu10g1661 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1661 - - gmx:100816861 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1661 10 42836960 42838070 Pvu10g1661 10 42836960 42838070 ECH