Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1656 ATGGCCAGACCCCAACAACGCTATCGTGGAGTCCGCCAAAGGCACTGGGGCTCTTGGGTCTCAGAAATTCGCCACCCTTTATTGAAGACTAGAATTTGGCTTGGAACCTTTGAAACGGCTGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTCATGTGTGGGCCAAAAGCACGCACCAATTTCCCATACAACCCCAATGAGCCACACTCATCCTCATCCAAGCTTCTCTCTGCCACTTTAACGGCTAAGTTACACAAGTGTCACATGGCCTCGCTTTCTCTTCAAATGGCCAAGCAAAAACCACCCCAGAACAACCAAGAGCCTCAATCCTCACAAGGGTCCAATTCATTTTCCTCTGCCAACATCATCGCTGGATCAAGCGCTGAAACTGGTTTCAGATGGCCAGAGAACAGACACGAGGAGCTAAGGTGGCTTGAAGGGAATTGGGTTGGCGTGGGAGGCCAAGTTGAAGTTTCACATCAACAGTTCCAGCCAGTTCTTGAAGATGATCACATAGAGCAGATGATTCAGGAGTTGCTTGATTATGGATCAATCGAGCTTTGCTCTGTTGGCTCCACCTAG 588 0.4915 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNEPHSSSSKLLSATLTAKLHKCHMASLSLQMAKQKPPQNNQEPQSSQGSNSFSSANIIAGSSAETGFRWPENRHEELRWLEGNWVGVGGQVEVSHQQFQPVLEDDHIEQMIQELLDYGSIELCSVGST* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1656 195 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Pvu10g1656 195 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Pvu10g1656 195 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Pvu10g1656 195 MobiDBLite consensus disorder prediction 97 121 - -
Pvu10g1656 195 PANTHER ETHYLENE RESPONSE FACTOR 1 191 - -
Pvu10g1656 195 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Pvu10g1656 195 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Pvu10g1656 195 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Pvu10g1656 195 MobiDBLite consensus disorder prediction 98 121 - -
Pvu10g1656 195 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Pvu10g1656 195 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Pvu10g1656 195 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1656 Pvu-Chr10 42802726 42804000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1656 1 195 AP2-EREBP Transcription Factor Family AT5G25190 61.929 1.89e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu10g1656 AP2 8.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1656 - - gmx:100777851 333.183