Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1648 ATGACCATGAACCACGAAATCTACTTGCACGCGCTCACCACCACCACCGCCAACTATTTCCTTGCCAAATCCGAAACGGCGCCGTCTCAGGCGCTCGACTCGTCGCAGAAGCTACGCTACGAAACGGCGCTCGAAGGGATAGCCGCGGTTGTTGGAGAGCACGTGCTCTTCGGAACCACGTCGTCGTTGCATGTTCCCGACACGCCCAAGAAAACGGCGGGCGTGTCGGCGAGCAAGAGTTACCGAGGAGTGAGGAAGAGACCGTGGGGGAGGTGGTCGGCGGAGATACGCGACCGGATCGGGCGGTGCCGCCACTGGCTGGGGACCTTCGACACGGCGGAGGAAGCGGCGCGTGCGTACGACGCGGCGGCGAGGCGGCTCAGAGGCGCGAAGGCGAGGACCAACTTCAAGATACCCTCTGTGCTGCCGCTCTCTCCGTCGTCGGAAGGTGGTGCCGTGAAGCCGAAAGCGGCGCGCAACAACGCGAGGAAGTGCTCCTCCGTGGAGCAGTTGTTCAGTGGCGTGCCTCAGACTCGAGGAAATGATTATGGTGGCGAGAACAAAAAGGTTGAGGTGGATTTGAAGCTGGGTGTTAAGTTTGGCGTTGCGAACACCAGAATAGTTATTTAG 630 0.6032 MTMNHEIYLHALTTTTANYFLAKSETAPSQALDSSQKLRYETALEGIAAVVGEHVLFGTTSSLHVPDTPKKTAGVSASKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFKIPSVLPLSPSSEGGAVKPKAARNNARKCSSVEQLFSGVPQTRGNDYGGENKKVEVDLKLGVKFGVANTRIVI* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1648 209 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Pvu10g1648 209 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Pvu10g1648 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 191 - -
Pvu10g1648 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 35 191 - -
Pvu10g1648 209 SUPERFAMILY DNA-binding domain 80 137 IPR016177 GO:0003677
Pvu10g1648 209 Gene3D AP2/ERF domain 79 138 IPR036955 GO:0003700|GO:0006355
Pvu10g1648 209 SMART rav1_2 80 143 IPR001471 GO:0003700|GO:0006355
Pvu10g1648 209 CDD AP2 79 138 IPR001471 GO:0003700|GO:0006355
Pvu10g1648 209 ProSiteProfiles AP2/ERF domain profile. 80 137 IPR001471 GO:0003700|GO:0006355
Pvu10g1648 209 Coils Coil 113 133 - -
Pvu10g1648 209 Pfam AP2 domain 80 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1648 Pvu-Chr10 42752077 42752935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1648 45 143 AP2-EREBP Transcription Factor Family AT1G80580 66.981 2.66e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu10g1648 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1648 - - gmx:102660200 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1648 10 42752077 42752935 Pvu10g1648 10 42752077 42752935 ECH