Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1647 ATGTTCAACGAGTCTTTGTTTTCTGCTATCCCCATTCCCATTTATTATCCACCATTCTCTTCTCAAACCCTTCACACAAATCTGCATCATTCACTCCCTGTACTTTCTTTTCTTCTGAGTTCTTCACTGCAAATGGGGGAGCCATGCCACAAATATTGGTTCTCTGATATGGAAATACAGGATTTTGATTTCTTTAACCAAAGCCATCACAAGATTGAGTCAGTGGATGATGAGTTCCTCTTCTCATCACAGCATGCACAAGAGAAACCTGCTACAGCCACAACCACCACTTCTCCAACTGCGTACATTCTATCTTTCAATGACTCCACCGTGGTTGCGGCTACCTGCCAAACCTACGGTGGAAAACAGCCGTACCAAGAGGAGGTTGTTGTGGGGAGTGGTGGCGCGTGTCTTCCCTCAAAAGGGGTCTCAGAAAAACATTACATTGAACCTAAGCCCAACCCAGCAACAAGAAAAGGAAGAAGTTCTGCAGAGACACTAGACCATATAATGACTGAGAGAAAAAGGAGACGGGAACTGACTGAGAGATTCATTGCACTTTCAGCCACCATACCTGGTTTGAAGAAGATTGACAAGGCCACTATACTTTGCGAAGCAATAACTTATGTGAAACGACTTAAAGAACGAGTAAGAGAGCTAGAAGAACAATGTAAGAGGACAAGGGTAGAGTCAGTGTCATTTGTTCATCAGAGATCCAATAATGGTAGTGACAAAGGCACAACCTCATCTGGTGCAATGAAATCTGATGAATGCTATAAAACCAGTGAAGCACTACCCACAGTGGAAGCAAGAGTGTTTAAAAAAGATCTACTCATTCGGATTCACTGCAAGTTACAAAATGGCATTTTGATCAAAATTTTGGACCATCTTAACACTCTTGATCTCTACACAACCAGCAACAGTGTAATGCCATTTGGAAGTTCAACTCTTGACATCAGCATTGTTGCTCAGATGGGTGACAAATTCAACGCAACAATGAATGATCTAGTGAAAAACCTGAGGCTGGTTCTCTTGCAGTCATGTGAAGTTCAACAATGA 1059 0.423 MFNESLFSAIPIPIYYPPFSSQTLHTNLHHSLPVLSFLLSSSLQMGEPCHKYWFSDMEIQDFDFFNQSHHKIESVDDEFLFSSQHAQEKPATATTTTSPTAYILSFNDSTVVAATCQTYGGKQPYQEEVVVGSGGACLPSKGVSEKHYIEPKPNPATRKGRSSAETLDHIMTERKRRRELTERFIALSATIPGLKKIDKATILCEAITYVKRLKERVRELEEQCKRTRVESVSFVHQRSNNGSDKGTTSSGAMKSDECYKTSEALPTVEARVFKKDLLIRIHCKLQNGILIKILDHLNTLDLYTTSNSVMPFGSSTLDISIVAQMGDKFNATMNDLVKNLRLVLLQSCEVQQ* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1647 352 Coils Coil 210 230 - -
Pvu10g1647 352 Gene3D - 157 230 IPR036638 GO:0046983
Pvu10g1647 352 SMART finulus 170 219 IPR011598 GO:0046983
Pvu10g1647 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 237 IPR036638 GO:0046983
Pvu10g1647 352 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 73 348 - -
Pvu10g1647 352 Pfam Helix-loop-helix DNA-binding domain 169 213 IPR011598 GO:0046983
Pvu10g1647 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Pvu10g1647 352 PANTHER BHLH TRANSCRIPTION FACTOR 73 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1647 Pvu-Chr10 42739413 42742153 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1647 160 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.632 3.38e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g1647 HLH 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1647 - - gmx:100777846 408.297