Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1646 ATGGAGGAGGACTCCTGCAACAACAATAATTCCCACCTTCACATGGAAATGGATTTCTTCGACAACAATGACTTCGACGATTTCTTCTCCGACATCATCCTCCACCAGACGCCACCGCCCACGCCCTTCTCCTCCGGAAGCGAAAGCGATCACTCCTTTCCCGCTTCCTCCTTCCTCCCCAACGCCGCCGCTAAACGCTCCTCTCCCAGGACTTACATTCTCTCCTTCGATAACTCCACGGTGGTGCCCGCCACTCCCGAACCCTCCGTCCCTTCTTCCCCTTTACCTGCCAAACGCGCCCTCAACGCTCAAAACCCCAAAACCAGACCCAATCAAGGATCCAAGAGAACCCGAACCTCTTCTCAGACCATCGATCACATAATGGCCGAGAGAAGGAGGAGGCAGGAACTCTCCGAGAGGTTCATAGCACTCTCAGCCACCATTCCCGGCTTGAACAAGACGGATAAGGCTTCTGTACTTCGAGCAGCGATCGATTATGTGAAACAGCTGAAAGAAAAGGTACAGGAGCTGGAGAAAGAAAGCAGAAAGAGTGCAGAAGAGACAGTGATATTGGTGAATAAAAGCAACCCAAATGGAAATGAAGAGATCACCAACTCCTCCACTGAAACCAACTGCAGCATCCTTCCGGAGATGAAAGCAAGAGTGTTGGGGAAGGAGGTTCTCATTGAGATCCACTGTGAGAAAGAATATGGTGTTGAGATCAAAATATTGGACCACCTTGAGAATCTTCATCTCTGTGTCACCGGAAGCAGTGTCTTGCCATTTGGGAATTCAGCTCTCTGCATTACCATCACAGCTCAGATGGATGAGCAGTGCCAAATGACAGTGAATGAAGTAGTGAAAAACCTTAAACAAAGTGCTCTCAGTGTCTCATTTGGTGAGCGATAG 909 0.495 MEEDSCNNNNSHLHMEMDFFDNNDFDDFFSDIILHQTPPPTPFSSGSESDHSFPASSFLPNAAAKRSSPRTYILSFDNSTVVPATPEPSVPSSPLPAKRALNAQNPKTRPNQGSKRTRTSSQTIDHIMAERRRRQELSERFIALSATIPGLNKTDKASVLRAAIDYVKQLKEKVQELEKESRKSAEETVILVNKSNPNGNEEITNSSTETNCSILPEMKARVLGKEVLIEIHCEKEYGVEIKILDHLENLHLCVTGSSVLPFGNSALCITITAQMDEQCQMTVNEVVKNLKQSALSVSFGER* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1646 302 PANTHER BHLH TRANSCRIPTION FACTOR 10 293 - -
Pvu10g1646 302 MobiDBLite consensus disorder prediction 32 54 - -
Pvu10g1646 302 Pfam Helix-loop-helix DNA-binding domain 126 171 IPR011598 GO:0046983
Pvu10g1646 302 Gene3D - 118 190 IPR036638 GO:0046983
Pvu10g1646 302 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 10 293 - -
Pvu10g1646 302 SMART finulus 127 176 IPR011598 GO:0046983
Pvu10g1646 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Pvu10g1646 302 Coils Coil 160 187 - -
Pvu10g1646 302 MobiDBLite consensus disorder prediction 104 124 - -
Pvu10g1646 302 MobiDBLite consensus disorder prediction 80 126 - -
Pvu10g1646 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 191 IPR036638 GO:0046983
Pvu10g1646 302 MobiDBLite consensus disorder prediction 37 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1646 Pvu-Chr10 42731171 42733209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1646 19 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.249 3.93e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g1646 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1646 - - vra:106773514 429.869