Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1645 ATGGAGGAGGACTCCTGCAACAATAATTCCCACCTTCACATGGAAATGGATTTCTTCGACAACAATGACTTCGACGATTTCTTCTCCGACATCATCTTCCACCAGACGCCACCGCCCACGCCCTTCTCCTCCGGAAGCGAAAGCGATCACTCCTTTCGCGCCTCCTCCTTCCTCCCCTCCGCCGCCGTTAACGCCGCCGCTTCCAAACGCTCCTCTCCCAGGACTTACATTCTCTCCTTCGATAACTCCACGGTGGTGCCCGCCACTCCCGAACCCTCCCTCCCTTCTTCCCCTTTGCCTGCCAAACGCGCCCTCCACTCTCAAAACCCCACGACCCGACCCAATCAAGGATCCAAGAGATCCCGAACCTCTTCTCAGACCATCGATCACATAATGGCCGAGAGAAGGAGGAGGCAGGAACTCACCGAGAGGTTCATAGCGCTCTCAGCCACCATTCCCGGCTTGAGCAAGACGGACAAGGCTTCTGTACTTCGAGCAGCTATCGATTATGTGAAACAGCTGAAAGAAAAGGTACAGGAGCTGGAGAAAGAAAGCAGAAAGAGTGCAGAAGAGACAGTGATATTGGTGAATAAAAGCAACCCAAATGGAAATGAAGAGATCACCAACTCCTCCACTGAAACCAACTGCAGCATCCTTCCGGAGATGGAAGCAAGAGTGTTGGGGAAGGAGGTTCTCATTGAGATCCACTGTGAGAAAGAATATGGTGTTGAGCTCAAAATATTGGACCACCTTGAAAATCTTCATCTCTGTGTCACCGGAAGCAGTGTCTTGCCATTTGGGAATTCAGCTCTCTGCATTACCATTACAGCTCAGATGGATGAGGAGCGGCAAATGACAGTGAATGAAGTAGTGAGAAACCTTAGAGAAGTGCTCTCAGTGTCTCATTTGGTGAGCGATAGTGATCCGTACTAG 933 0.5091 MEEDSCNNNSHLHMEMDFFDNNDFDDFFSDIIFHQTPPPTPFSSGSESDHSFRASSFLPSAAVNAAASKRSSPRTYILSFDNSTVVPATPEPSLPSSPLPAKRALHSQNPTTRPNQGSKRSRTSSQTIDHIMAERRRRQELTERFIALSATIPGLSKTDKASVLRAAIDYVKQLKEKVQELEKESRKSAEETVILVNKSNPNGNEEITNSSTETNCSILPEMEARVLGKEVLIEIHCEKEYGVELKILDHLENLHLCVTGSSVLPFGNSALCITITAQMDEERQMTVNEVVRNLREVLSVSHLVSDSDPY* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1645 310 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 302 - -
Pvu10g1645 310 MobiDBLite consensus disorder prediction 102 128 - -
Pvu10g1645 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 195 IPR036638 GO:0046983
Pvu10g1645 310 SMART finulus 131 180 IPR011598 GO:0046983
Pvu10g1645 310 Coils Coil 164 191 - -
Pvu10g1645 310 Pfam Helix-loop-helix DNA-binding domain 130 175 IPR011598 GO:0046983
Pvu10g1645 310 Gene3D - 122 194 IPR036638 GO:0046983
Pvu10g1645 310 PANTHER BHLH TRANSCRIPTION FACTOR 9 302 - -
Pvu10g1645 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Pvu10g1645 310 MobiDBLite consensus disorder prediction 87 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1645 Pvu-Chr10 42721159 42723365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1645 116 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.833 6.51e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g1645 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1645 - - vra:106773514 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1875 5 40301041 40302783 Pvu10g1645 10 42721159 42723365 PCT