Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1644 ATGATGGAGGACTCATGGCAAAACTGGCTCTCTCATTTGGGAATGAATGATAACTTTGGGTGCAGCAGCAATGTATGCTTTGAAGAGATGGTATGGTTGGATAATGGGCAAGGTTGTGATAGGTCCAACAATGAGGTAGGTTGCATGGGGATGAAGGAGGAACATTCAGAGTGTTGTTGCAGTAAAAGGGGTGTTGGGAAGCATGAGGAGTTGGAGGAAAAGGGAAGGGAGAAGAGAGGAACAAAGAGAGCAAGAACCTCTTCTGAGATAGAATATCACATAATCTCTGAGAGGAAAAGGAGACAGGATATTGCAGAGAAATTCATAGCACTCTCAGCTACTATACCTGGCTTGAAGAAGATAGACAAGGCCTCAATACTTGGAGAAGCCATAAAGTACATGCGACAACTTCAACAACGCATAGCAGTGTTGGAAAAAGCAAGCAACAATAATAACAGTGCAAAGTCGTTGATCATCACCAAATCACACCTTTGTTCAACATCATGTGAACAAAACTCTAACATTGAAGTTGAAGCAAGGGGATTGGAGAATGAAGTGCTCATTAGAATCTATTGTGAGCAACGAAAGGACATCATGCTAAACCTAATTACCCTTCTCAAAGATCTTCATCTCTCAGTAACCACTAGCACTGTATTGCCATTTGGAAACTCTCTTCTCAACATTATCATCGTTGCTCAGATGAGTGAGGAGTACAACTTGACGATAACTGATTTGGTTAAGACATTGAAGCAGAATCTTTTCAAGTTTTGTGAGGTGTAA 780 0.4115 MMEDSWQNWLSHLGMNDNFGCSSNVCFEEMVWLDNGQGCDRSNNEVGCMGMKEEHSECCCSKRGVGKHEELEEKGREKRGTKRARTSSEIEYHIISERKRRQDIAEKFIALSATIPGLKKIDKASILGEAIKYMRQLQQRIAVLEKASNNNNSAKSLIITKSHLCSTSCEQNSNIEVEARGLENEVLIRIYCEQRKDIMLNLITLLKDLHLSVTTSTVLPFGNSLLNIIIVAQMSEEYNLTITDLVKTLKQNLFKFCEV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1644 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 149 IPR036638 GO:0046983
Pvu10g1644 259 Pfam Helix-loop-helix DNA-binding domain 93 138 IPR011598 GO:0046983
Pvu10g1644 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 137 IPR011598 GO:0046983
Pvu10g1644 259 SMART finulus 94 143 IPR011598 GO:0046983
Pvu10g1644 259 PANTHER BHLH TRANSCRIPTION FACTOR 7 259 - -
Pvu10g1644 259 Gene3D - 84 151 IPR036638 GO:0046983
Pvu10g1644 259 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 7 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1644 Pvu-Chr10 42712384 42715399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1644 42 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.728 1.13e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g1644 HLH 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1644 - - gmx:100778916 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1874 5 40289878 40292459 Pvu10g1644 10 42712384 42715399 PCT
Pvu10g1644 10 42712384 42715399 Pvu5g1875 5 40301041 40302783 PCT