Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1643 ATGGAGGAGTCAGGGGAAAATTGGCCTTCTGATTCTTATTTGGAAGTAGGTGATGACGTCAAGGATTCGTGTTTCGACGATGAAGAATCTGTGAGTGAGGAGGATGACGGAGATTCCTTTTCCGAGATGAAAACTATCAACAGAAAACAGAGGCAACAGAAACTCGGGGAGAGGTTCCTTGCACTCTCAGCAACCATACCTGGCTTCCAAAAGATGGACAAAACTTCGATTCTGGACAAAGCAAGCAAGTATGTGAGAGAACTAGAAGAACGAGTGAGAGAACTGGAGCAAGAAGTTGAATCCAACAAGGTTTGTGTGAGCAGCAGCAGCAGCTCTTGGGAAGTGAACTCCAACAATGGCTATTGCCATGGATCAAATCAAGATCTGGAAGTGAAAGTGAGAGTGTTGCAGAAAGAAGTTCTGATAATAGTTCACTGTGAGAAACAAAAAGGAATCATGCTCAAAATACTATCACACCTTGAAAATATCAATCTCTCTGTCATCAACAGCAGTGTCTTGCGATTTGGAAACTCCACACTCGACATCACCATTATTGCTCAGATGGGTGAGGGATACGAGATGGGAGTGGATGAACTAGTGAAGAGCCTGAGATTAGCGATCTTGACTCAGTAG 633 0.4376 MEESGENWPSDSYLEVGDDVKDSCFDDEESVSEEDDGDSFSEMKTINRKQRQQKLGERFLALSATIPGFQKMDKTSILDKASKYVRELEERVRELEQEVESNKVCVSSSSSSWEVNSNNGYCHGSNQDLEVKVRVLQKEVLIIVHCEKQKGIMLKILSHLENINLSVINSSVLRFGNSTLDITIIAQMGEGYEMGVDELVKSLRLAILTQ* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1643 210 Pfam Helix-loop-helix DNA-binding domain 44 89 IPR011598 GO:0046983
Pvu10g1643 210 Coils Coil 78 105 - -
Pvu10g1643 210 PANTHER BHLH TRANSCRIPTION FACTOR 45 210 - -
Pvu10g1643 210 MobiDBLite consensus disorder prediction 21 36 - -
Pvu10g1643 210 Gene3D - 43 110 IPR036638 GO:0046983
Pvu10g1643 210 PANTHER PROTEIN, PUTATIVE-RELATED 45 210 - -
Pvu10g1643 210 SMART finulus 45 94 IPR011598 GO:0046983
Pvu10g1643 210 MobiDBLite consensus disorder prediction 1 44 - -
Pvu10g1643 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 103 IPR036638 GO:0046983
Pvu10g1643 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1643 Pvu-Chr10 42700291 42705130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1643 46 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.805 4.27e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g1643 HLH 0.0003 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1643 - - vra:106773517 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1643 10 42700291 42705130 Pvu5g1874 5 40289878 40292459 PCT