Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1623 ATGGCTTTTTGGTTTTGTTGCGGAAAAGTTTCGAACCGGGCAAGGCGAGGGAAAGAACAACCCACATGGCGGGTGTTTTCTTTGAAGGAATTACACTCTGCTACGAACAATTTCAACTATGACAACAAGCTTGGAGAAGGATGCTTTGGCAGTGTGTACTGGGGCCAACTTTGGGATGGATCGCAAATCGTGGTGAAAAGATTGAAAGTTTGGAGCAACATAGATGAGACAGAATTTACAGTTGAACTTGAAATCTTGGCAAGAATACGACACAAGAATCTTCTCAGTTTTCGTGGCTTCTGTGCTGAAGGACAGGAACGGTTAATTGTGTATGAATATATGCATAATCTGAGTCTCCACTCTCATCTTCATGGACACCATTCATTCGAAAGCCCTCTCGATTGGAATCGTCGGATGAAAATAGCAATTGGTTCTGCTGAAGGAATTGTGTACCTTCACCACCAAGCAACACCACGTATCATCCACAGGGATATTAAATCAAGCAATGTGTTGCTGGATTCTGATTTCCGGGCCAAGGTTGCTGATTTTGGGTTTGCCAGGTTGATCCCTGATGGGGCAACACATGTGATGACTACAAAAGTTAAGGGAACTCTTGGCTACCTTGCACCAGAATATGCTATGTTAGGTAAAGCATATGAGAGTTGTGATGTCTACAGTTTTGGTGTTCTCCTTCTAGAACTCGCCAGTGGCAGAAGACCAACAGAAAAGCTTAGTTCCACAGTGAGGCAATCAATAGTTGATTGGGCATTGCCATTGGTTTGTGAGAAGAAATTTGGTGAAATTGCTGATCCAAGACTGAATGGTAACTATGTGGAGGCAGAGCTTAAAAGGGTTGTTTTAGTTGCACTTATGTCTGCTCAGGATCTTCCTGAGAAGAGACCAACCATGCTTGATGTGGTAGAGCTACTCAAGGGAGAGTCTAAGGACAAATTTTCTCATATAGAGAACAGTGAAATGTTCAGAAACCCTCTAGATGCAGAAACCAATGATGGAACATCAGAGACTGAAGACAGTTTCGACTATATCTCAGAAGAAAAAGAGTTAGAACGTCCATTGAGAGAGAATGCTGAACTATGA 1098 0.4262 MAFWFCCGKVSNRARRGKEQPTWRVFSLKELHSATNNFNYDNKLGEGCFGSVYWGQLWDGSQIVVKRLKVWSNIDETEFTVELEILARIRHKNLLSFRGFCAEGQERLIVYEYMHNLSLHSHLHGHHSFESPLDWNRRMKIAIGSAEGIVYLHHQATPRIIHRDIKSSNVLLDSDFRAKVADFGFARLIPDGATHVMTTKVKGTLGYLAPEYAMLGKAYESCDVYSFGVLLLELASGRRPTEKLSSTVRQSIVDWALPLVCEKKFGEIADPRLNGNYVEAELKRVVLVALMSAQDLPEKRPTMLDVVELLKGESKDKFSHIENSEMFRNPLDAETNDGTSETEDSFDYISEEKELERPLRENAEL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1623 365 Gene3D Transferase(Phosphotransferase) domain 1 114 328 - -
Pvu10g1623 365 Pfam Protein tyrosine and serine/threonine kinase 40 247 IPR001245 GO:0004672|GO:0006468
Pvu10g1623 365 PANTHER OS01G0750732 PROTEIN 4 357 - -
Pvu10g1623 365 SUPERFAMILY Protein kinase-like (PK-like) 20 310 IPR011009 -
Pvu10g1623 365 ProSitePatterns Protein kinases ATP-binding region signature. 44 66 IPR017441 GO:0005524
Pvu10g1623 365 Gene3D Phosphorylase Kinase; domain 1 8 113 - -
Pvu10g1623 365 ProSiteProfiles Protein kinase domain profile. 38 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1623 365 CDD STKc_IRAK 44 312 - -
Pvu10g1623 365 SMART serkin_6 38 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1623 365 PANTHER BNAA05G14800D PROTEIN 4 357 - -
Pvu10g1623 365 MobiDBLite consensus disorder prediction 326 365 - -
Pvu10g1623 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Pvu10g1623 365 MobiDBLite consensus disorder prediction 350 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1623 Pvu-Chr10 42496632 42499713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1623 25 306 Trihelix Transcription Factor Family AT1G68690 49.301 7.44e-87 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Pvu10g1623 PK_Tyr_Ser-Thr 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1623 - - gmx:100814204 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1845 5 40087221 40090369 Pvu10g1623 10 42496632 42499713 PCT