Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1608 ATGGCGCAAATTCTGCTTCATGGGACTCTCCACGCCACCATCTACGAGGTTGACAAGCTCCACGCTGGTGGGGGCGGCAATTTCTTCACCAAGCTCAAGCAAAACATTGAGGAGACTGTAGGTATTGGAAAGGGAGTTACTAAACTCTATGCAACCATTGATCTGGAGAAGGCAAGAGTAGGAAGGACTAGAATTATAGAAAATGAACATACTAATCCCAAATGGGAGGAGTCTTTTCACATTTATTGTGCCCATGTGGCTTCAGATATTATATTCACTGTGAAAGATGATAATCCCATCGGGGCAACTTTAATTGGAAGAGCATATGTTCCTGTTTCTGAGGTCTTGGATGGCCACGAAATAGATAGGTGGGTTGAAATCTTGGACACAGAGAAAAAGCCAATACAAGAGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTCTCAAAAGACCGCAACTGGGCTCGAGGAATTAGAAGTCCAAAATACCCTGGAGTTCCCTATACTTTCTTCTCACAGAGGCAAGGATGTAAGGTATTTCTGTACCAAGATGCTCATGTACCTGATAACTTTGTACCTAAAATACCTCTTTCTGGAGGCAAGAATTATGAGGCTCATAGGTGTTGGGAGGATATATTTGATGCGATCACTAATGCAAAACACTTGATATACATTACTGGTTGGTCTGTTTATACGGAAATTTCCTTGGTAAGGGATTCTAGGAGGCCAAAGCCTGGGGGAGACCAAACACTCGGTGAGCTTCTCAAGAAAAAGGCAAGTGAAGGTGTTAAGGTATTGATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAGGATGGATTGATGGCTACTCATGATGAAGAAACCCAGCAGTTCTTCAGTGGCACTGATGTGCACTGTGTTTTATGCCCTCGCAATCCTGATGATGGTGGGAGCATTGTTCAAGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTGGTGGTTGACAGTGCATTGCCTGGAGGTGGAGGATCTGAGAAGCGAAGAATTGTGAGTTTTGTTGGGGGTATCGACCTCTGTGATGGAAGATATGACACTGCCTTTCACTCACTTTTCAGAACCCTAGACACAGCACACCATGATGATTTTCATCAGCCTAACTTTACTGGTGCTGCAATCACAAAAGGTGGTCCCAGGGAACCATGGCATGATATCCACTCCCGGGTCGAAGGACCCATTGCGTGGGATGTTTTGTTCAACTTTGAGCAGAGATGGAGAAAGCAAGGTGGGAAGGATTTACTTGCTCCTCTGAGAGAGCTTGAAGATGTCATTATTCCCCCATCCCCAGTAACGTTTCCTGAAGATCATGAGACCTGGAATGTTCAGCTATTTAGATCTATTGATGGTGGTGCTGCTTTTGGGTTCCCAGATACTCCTGAAGATGCTGCCAAAGCCGGACTCATTAGTGGGAAAGATAACATCATTGATCGTAGCATTCAAGATGCTTATATTCACGCTATTCGTCGTGCTAAGAATTTCATCTATATCGAAAATCAGTATTTCCTTGGAAGCTCATTTGCCTGGAGCAATACCGATATTAAGCGTGAAGACATTGGTGCATTGCATCTAATCCCAAAGGAACTTTCCCTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCACCGTGTATGTCGTAGTCCCTATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAAAGGAGAACAATGGAGATGATGTACAAGGACATTATTCAGGCACTCAGAGCTAAGGGAAGCGAGGAAGATCCCCGAAACTACTTGACATTCTTCTGCCTTGGAAATCGAGAGGTGAAGAAGTCAGGAGAATTTGAGCCCTCCGAAAAACCAGATCCTGATTCAGATTATCAGAGAGCTCAAGAAGCCAGGCGTTTCATGATTTATGTTCATACCAAGATGATGATTGTTGATGATGAATACATAATCATTGGATCTGCCAACATCAACCAGAGGTCAATGGATGGATCCAGAGACTCTGAGATTGCCATGGGTGCTTATCAGCCATATCATTTGGCTACCCAACAGCCGGCACGTGGCCAAGTCCACGGTTTCCGCTTGTCATTGTGGTATGAGCACCTTGGCATGCTTCATGACTCCTTCCTCAAGCCAGAAAGTGAAGAATGCATTACTAAGGTGAACCAGGTTGCTGACAAATATTGGGATCTGTATTCTAGTGAGTCACTTGAGCGTGACCTTCCCGGTCACCTTCTCCGCTACCCCATTGGGGTGGCCAGTGAAGGAGATGTCACTCAGCTGCCAGGATTTGAGTTCTTCCCTGACACCAAGGCTCGCATTCTTGGTGCCAAAGCTGACTACCTCCCCCCTATCCTCACTACCTAG 2430 0.4486 MAQILLHGTLHATIYEVDKLHAGGGGNFFTKLKQNIEETVGIGKGVTKLYATIDLEKARVGRTRIIENEHTNPKWEESFHIYCAHVASDIIFTVKDDNPIGATLIGRAYVPVSEVLDGHEIDRWVEILDTEKKPIQEGSKIHVKLQYFDVSKDRNWARGIRSPKYPGVPYTFFSQRQGCKVFLYQDAHVPDNFVPKIPLSGGKNYEAHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPGGDQTLGELLKKKASEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETQQFFSGTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSALPGGGGSEKRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFTGAAITKGGPREPWHDIHSRVEGPIAWDVLFNFEQRWRKQGGKDLLAPLRELEDVIIPPSPVTFPEDHETWNVQLFRSIDGGAAFGFPDTPEDAAKAGLISGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSNTDIKREDIGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIIQALRAKGSEEDPRNYLTFFCLGNREVKKSGEFEPSEKPDPDSDYQRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGSRDSEIAMGAYQPYHLATQQPARGQVHGFRLSLWYEHLGMLHDSFLKPESEECITKVNQVADKYWDLYSSESLERDLPGHLLRYPIGVASEGDVTQLPGFEFFPDTKARILGAKADYLPPILTT* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1608 809 Gene3D Endonuclease Chain A 482 703 - -
Pvu10g1608 809 Gene3D Endonuclease Chain A 199 441 - -
Pvu10g1608 809 Gene3D C2 domain 7 159 IPR035892 -
Pvu10g1608 809 Pfam Phospholipase D C terminal 728 799 IPR024632 -
Pvu10g1608 809 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Pvu10g1608 809 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 365 IPR001736 GO:0003824
Pvu10g1608 809 PANTHER PHOSPHOLIPASE D ALPHA 1 2 809 - -
Pvu10g1608 809 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 655 682 IPR001736 GO:0003824
Pvu10g1608 809 PANTHER PHOSPHOLIPASE D 2 809 IPR015679 -
Pvu10g1608 809 Pfam C2 domain 9 127 IPR000008 -
Pvu10g1608 809 Pfam Phospholipase D Active site motif 656 682 IPR001736 GO:0003824
Pvu10g1608 809 Pfam Phospholipase D Active site motif 326 365 IPR001736 GO:0003824
Pvu10g1608 809 SMART C2_3c 9 124 IPR000008 -
Pvu10g1608 809 PIRSF PLD_plant 1 809 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pvu10g1608 809 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
Pvu10g1608 809 SMART pld_4 326 365 IPR001736 GO:0003824
Pvu10g1608 809 SMART pld_4 655 682 IPR001736 GO:0003824
Pvu10g1608 809 SUPERFAMILY Phospholipase D/nuclease 152 446 - -
Pvu10g1608 809 SUPERFAMILY Phospholipase D/nuclease 478 739 - -
Pvu10g1608 809 CDD C2_plant_PLD 2 148 - -
Pvu10g1608 809 CDD PLDc_pPLDalpha_2 493 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1608 Pvu-Chr10 42409778 42414070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1608 1 809 Phospholipase D Gene Family (Wang group) AT3G15730 82.716 0.0 1428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1608 K01115 - gmx:100786410 1562.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1608 10 42409778 42414070 Pvu5g1833 5 40017084 40022311 ECH
Pvu9g0958 9 14385072 14388517 Pvu10g1608 10 42409778 42414070 ECH
Pvu10g1608 10 42409778 42414070 Pvu10g1608 10 42409778 42414070 ECH
Pvu5g1833 5 40017084 40022311 Pvu10g1608 10 42409778 42414070 PCT