Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1607 ATGGTGCAATCAAGGAAATTCAGAGGTGTGAGGCAACGCCATTGGGGTTCCTGGGTTTCTGAGATTCGTCACCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGACAGCAGAGGAAGCAGCAAGAGCATATGATGAGGCAGCTATTTTGATGAGTGGAAGAAACGCTAAAACAAACTTCCCAGTTGGTGAAAACCAAGTGGTGAATCACTCAACATCCTCTTCTTCATCCACCACCACCACATTGTCTGAAGTTCTGAGTGCAAAGCTCAGGAAGTGCTGCAAGTCCCCTTCACCTTCCCTCACTTGCCTAAGGCTTGACACTGAGAATTCCCACATAGGGGTGTGGCAGAAGAGAGCAGGCCCTCGTTCTGACTCAAACTGGATCATGATGGTTGAGTTGGAAAAAAAGAACAGCGAGGGTGATCAAGATCAATGTCCTTCTTCTGACTCAGAAGTTCCTGTTGTTGTTGTTGATCATCATGATCATCATGCCCCAGAGAAGATAAAGCCTGAGGAAGGAAATGGCTTAGATGAGGAGCAGAGAATGGCTCTGCAGATGATAGAGGAACTTCTGAATAGGAATTGA 594 0.4646 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVGENQVVNHSTSSSSSTTTTLSEVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELEKKNSEGDQDQCPSSDSEVPVVVVDHHDHHAPEKIKPEEGNGLDEEQRMALQMIEELLNRN* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1607 197 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pvu10g1607 197 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Pvu10g1607 197 PANTHER ETHYLENE RESPONSE FACTOR 1 197 - -
Pvu10g1607 197 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 197 - -
Pvu10g1607 197 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Pvu10g1607 197 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Pvu10g1607 197 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Pvu10g1607 197 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Pvu10g1607 197 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pvu10g1607 197 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1607 Pvu-Chr10 42398336 42399999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1607 1 197 AP2-EREBP Transcription Factor Family AT1G15360 59.155 9.64e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu10g1607 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1607 - - gmx:100796962 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1607 10 42398336 42399999 Pvu10g1607 10 42398336 42399999 ECH