Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1578 ATGGTTGGAGGTTCCTTAGCAGGGTTGCAAGAGCACCTCAAGTTAGCAAGAGACTACGCCGTGGAAGGGCTCTACGACACCTCCACCATCTTCTTCGACGGTGCACTTGCTCAGATCAACAAGCACCTAACCACCGTAGAAGACCCTCTGATTCGCGCAAAATGGATGAATGTGAAGAAAGCGCTTTCGGAAGAAACCGAAGTTGTGAAACAGTTAGATGCAGAGAGAAGGGCTTTCAAAGAAAACCCCATTGGAAGACGCGCCGTTTCGCCTCCCATTTCCGCCAAGTCCTCGTCTTTCGTTTTTCAGCCGTTGGATGAGTACCCCACTTCATCAAGCGGTCCTGGGCCTGTTGATGATCCCGATGTGTGGCGGCCACCCAGTAGGGATACCAGTAGGAGACCCGCCAGGTCCGGTCAAGTGGGTACCCGCAAATCTCCCCAAGATGGGGCCTGGGCGCGCGGTGCTACTGCTAGAAGTGGTTCAACCGGGCGCGGTGGTGCTAAAGGTGGAGCTATCAGTAGGGTTAACTCGGGGACACGAGCATCCGCTACAGGGAAGAAAGGCAATGTTTCTGGAAAGTCTACCAAGACGGATACTGCAGCTGTAACTAATGGTCAAAATGGTGATTCTGAAGATGGTAAGTCAAAGAAGGGTCAATATGAAGGTGCTGATCCTGAATTGGCTGCAATGCTTGAAAGGGACGTGTTAGAAACCTCTCCTGGAGTTAGATGGGATGATGTTGCAGGACTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTGTGGATGCCTGAATATTTCCAGGGTATCAGGAGACCATGGAAAGGTGTTCTTATGTTTGGACCTCCAGGAACTGGGAAGACTCTTCTTGCTAAGGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTATCTTCTGCAACTTTGGCTTCTAAATGGCGTGGTGAGAGTGAACGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTTATTGATGAAATTGATTCTCTATGCAATGCAAGGGGGGCATCTGGGGAGCATGAATCGTCTAGAAGGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCCACAAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCCGCAACTAACTTTCCATGGGATATAGATGAGGCATTAAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGCAAAGAGCTGATCCGGATAAATTTGAAGACTGTTGAGGTGGCGGCTGATGTGAATATAGATGAAGTGGCTCGCCGGACAGAGGGCTATAGTGGAGATGATTTGACTAATGTCTGTCGAGACGCTTCCTTAAACGGTATGAGGCGAAAGATAGCAGGAAAGACTCGTGACGAAATCAAGAACATGTCCAAGGATGAGATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGTTAAGGTCCAACGAAGTGTTTCTCAGGCTGATATTGAACGCCACGAGAAGTGGTTTACCGAGTTTGGATCAGCATAA 1593 0.4758 MVGGSLAGLQEHLKLARDYAVEGLYDTSTIFFDGALAQINKHLTTVEDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKENPIGRRAVSPPISAKSSSFVFQPLDEYPTSSSGPGPVDDPDVWRPPSRDTSRRPARSGQVGTRKSPQDGAWARGATARSGSTGRGGAKGGAISRVNSGTRASATGKKGNVSGKSTKTDTAAVTNGQNGDSEDGKSKKGQYEGADPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFTEFGSA* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1578 530 Gene3D - 4 80 - -
Pvu10g1578 530 PANTHER AAA DOMAIN-CONTAINING 4 530 - -
Pvu10g1578 530 Pfam ATPase family associated with various cellular activities (AAA) 282 419 IPR003959 GO:0005524|GO:0016887
Pvu10g1578 530 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 4 530 - -
Pvu10g1578 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 526 IPR027417 -
Pvu10g1578 530 MobiDBLite consensus disorder prediction 176 210 - -
Pvu10g1578 530 MobiDBLite consensus disorder prediction 104 222 - -
Pvu10g1578 530 CDD AAA 276 419 - -
Pvu10g1578 530 Gene3D - 240 521 IPR027417 -
Pvu10g1578 530 SMART AAA_5 278 421 IPR003593 -
Pvu10g1578 530 Pfam AAA+ lid domain 441 482 IPR041569 -
Pvu10g1578 530 Coils Coil 62 82 - -
Pvu10g1578 530 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 530 IPR028596 GO:0008017|GO:0008568|GO:0051013
Pvu10g1578 530 ProSitePatterns AAA-protein family signature. 391 410 IPR003960 GO:0005524|GO:0016887
Pvu10g1578 530 Gene3D - 420 506 - -
Pvu10g1578 530 Pfam Vps4 C terminal oligomerisation domain 483 528 IPR015415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1578 Pvu-Chr10 42172730 42177192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1578 203 522 Calmodulin-binding Proteins AT3G56690 37.574 2.84e-52 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1578 K07767 - gmx:100787634 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1789 5 39657672 39660082 Pvu10g1578 10 42172730 42177192 PCT