Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1575 ATGTTGGCAGTGGAAGCATTGCAGAATGCAGAGAAGAGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTCGTTGGAGATGTCCCATGGGAAATGTTTGTGGAGTCATGCAAGAGGCTGAGGATTATGAAGAGAGCAGATGCAAAGGGGTTTGGTTTGCAACCAAAAGGATCTTTAAAGGGATTCATAGAAAGCGTGGGAAAGTGA 219 0.4521 MLAVEALQNAEKSEHVPIYEDKDGDWMLVGDVPWEMFVESCKRLRIMKRADAKGFGLQPKGSLKGFIESVGK* 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1575 72 SUPERFAMILY CAD & PB1 domains 12 48 - -
Pvu10g1575 72 PANTHER AUXIN-RESPONSIVE PROTEIN 4 62 - -
Pvu10g1575 72 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 62 IPR003311 GO:0005634|GO:0006355
Pvu10g1575 72 Pfam AUX/IAA family 10 55 IPR033389 -
Pvu10g1575 72 Gene3D - 2 60 - -
Pvu10g1575 72 ProSiteProfiles PB1 domain profile. 1 51 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1575 Pvu-Chr10 42144076 42147007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1575 1 57 B3 DNA Binding Superfamily AT5G20730 32.759 2.42e-06 41.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pvu10g1575 AUX_IAA 1.4e-25 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1575 K14484 - pvu:PHAVU_010G151700g 150.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1575 10 42144076 42147007 Pvu5g1784 5 39626314 39629755 PCT