Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1534 ATGATGGCTGGAAACCCTAACTGGTGGACTGCACATCCACCATCTTTGATCCCTCCCCAGTATGCTCTTGGATCTTCTTCAATACCCTTTAATTCTTCCTCTCAGAACCCTGAGTCCCCTCACTCATTGAGCCAACTTCTTTTCACTGGTTTACCAGGAGAGGAGGAGAGAGTGGCATTCAGTCATTTTCAATCAAAAAAGTTGGATGAATGGAACGAGCACATGCTTAATCAATCCCACATAAATCCTATGGTTGATGTAATAAAGCAAGAGGTTGCCCAAAGTGGAAACTTCTACCACCATGATCAAGAATTTCAGGTTTCTGGAGCACCTTGGTCACACATGGTGCCAGTTTCTTCTTCTCCTAGGTCTAGTGTTGCTAGCTTCAGTAGTGATAATTTATTGGATTCCCCTTATAACAAGGAAGATCATAGGAAGAACCAACTACCAGATCACACATCCGAGTGTAATACCACAGGCAGTGGTGGAGTTTATAAGAAGACTAAAAGTCAGCCATCTTCAAGCCAACCACCTCTCAAGGTGAGAAAGGAGAAGCTAGGAGATAGAATAACAGCCCTTCACCAGCTAGTTTCCCCATTCGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAGGCACTGAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTCAACAGGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGGATGCAAAAGAGAAGGCAAAGGACTTGAGGAGTAGAGGGTTGTGCTTGGTTCCTGTGTCTTGCACCCAACATGTTGGAAATGAAAATGGAGGTGATTACTGGGCACCAGCATATGGCAGTGGATTTTAA 954 0.4423 MMAGNPNWWTAHPPSLIPPQYALGSSSIPFNSSSQNPESPHSLSQLLFTGLPGEEERVAFSHFQSKKLDEWNEHMLNQSHINPMVDVIKQEVAQSGNFYHHDQEFQVSGAPWSHMVPVSSSPRSSVASFSSDNLLDSPYNKEDHRKNQLPDHTSECNTTGSGGVYKKTKSQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLGNGSKNMRNPQSQQVHGERNSVFPEDPGQLLNDNGLKRKGAPNQDAKEKAKDLRSRGLCLVPVSCTQHVGNENGGDYWAPAYGSGF* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1534 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Pvu10g1534 317 MobiDBLite consensus disorder prediction 137 151 - -
Pvu10g1534 317 MobiDBLite consensus disorder prediction 123 180 - -
Pvu10g1534 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 231 IPR036638 GO:0046983
Pvu10g1534 317 Gene3D - 180 238 IPR036638 GO:0046983
Pvu10g1534 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 21 304 - -
Pvu10g1534 317 MobiDBLite consensus disorder prediction 152 178 - -
Pvu10g1534 317 CDD bHLH_AtbHLH_like 180 227 IPR045239 -
Pvu10g1534 317 MobiDBLite consensus disorder prediction 234 250 - -
Pvu10g1534 317 MobiDBLite consensus disorder prediction 234 278 - -
Pvu10g1534 317 PANTHER OS05G0228400 PROTEIN 21 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1534 Pvu-Chr10 41857600 41861790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1534 150 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 67.826 3.67e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1534 - - gmx:100802121 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1534 10 41857600 41861790 Pvu10g1534 10 41857600 41861790 ECH