Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1529 ATGTCTGCACCCTTGGAACATGATTACATAGGCTTAGCAGATACTCCATACATGGAGAAAAGCTGTGACAAGATATCCTCTTCAGTTTCATCCAACATCTCCTCTGAGGATGACAACACTTCATCTCTGAACTTCAAGGAGACAGAGCTGAGGCTTGGCCTGCCCGGTTGTGAGTCTCCTGAGAACAAATCAGGAGCTGCAGGGATCTCTCTTTTTGGCAAGGATTTGCAGAATAATAATGGCTATTCTGCTTCCTCAACCCCTTCCAAGAACCTCAAGAGGGGTTTCTCTGATGCCATTAGCTCCTCCTCCTCCTCCTCCTCTTCTGGGAAATGGATTTTCTCAGGCAGTGATGCAACTGGGGATGATTTGAGAAATGGTGTTAATACCTCTGCACTATGCAACACAGAGGTTGGTTGCTTGGTTCTTCACTCTGAGAAGCCGCCTCAGGTTGCTGCAACAATTGAACATGCTGCTACTCCTGCTGCAAAAGCACAAGTTGTGGGATGGCCACCAATTCGATCTTTTAGGAAGAACACAATGGCCTATAATTTGGCAAAAAGCAACACTGAAGCTGAGGAGAAATCAAGAGTTGGCTGTCTTTATGTTAAGGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTGAAAACCCACAGCAACTATATTGAACTTTCTTCTGCTCTTGAGAAAATGTTCAGCTGCTTCACCATTGGTCAATGCAGTTCAGGGGGAGTTGCTGGGAAAGAGGGATTGAGGGAGAGAGCTTTCAGGAATGTTGTTGATGGCTCTGAATATGTTTTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTGGGTGATGTCCCTTGGGAGATGTTCACTGAGTCATGTAAGAAACTAAGGATAATGAAAGGCTCTGAGGCAATTGGACTTGCTCCAAGGGCAATGGAGAAATGTAGGAGGCAATACTAG 963 0.4517 MSAPLEHDYIGLADTPYMEKSCDKISSSVSSNISSEDDNTSSLNFKETELRLGLPGCESPENKSGAAGISLFGKDLQNNNGYSASSTPSKNLKRGFSDAISSSSSSSSSGKWIFSGSDATGDDLRNGVNTSALCNTEVGCLVLHSEKPPQVAATIEHAATPAAKAQVVGWPPIRSFRKNTMAYNLAKSNTEAEEKSRVGCLYVKVSMDGAPYLRKVDLKTHSNYIELSSALEKMFSCFTIGQCSSGGVAGKEGLRERAFRNVVDGSEYVFTYEDKDGDWMLVGDVPWEMFTESCKKLRIMKGSEAIGLAPRAMEKCRRQY* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1529 320 ProSiteProfiles PB1 domain profile. 200 302 IPR000270 GO:0005515
Pvu10g1529 320 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 311 IPR003311 GO:0005634|GO:0006355
Pvu10g1529 320 Pfam AUX/IAA family 47 311 IPR033389 -
Pvu10g1529 320 SUPERFAMILY CAD & PB1 domains 200 301 - -
Pvu10g1529 320 MobiDBLite consensus disorder prediction 82 111 - -
Pvu10g1529 320 PANTHER AUXIN-RESPONSIVE PROTEIN 17 311 - -
Pvu10g1529 320 Gene3D - 194 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1529 Pvu-Chr10 41831025 41833599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1529 188 305 B3 DNA Binding Superfamily AT2G46530 31.933 5.58e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pvu10g1529 AUX_IAA 9e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1529 K14484 - gmx:100795203 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1529 10 41831025 41833599 Pvu10g1529 10 41831025 41833599 ECH