Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1523 ATGACACAAACAACAACCTCGTCTGAAACAACCTCTTCTACGTCGTCGCCGTCCTCGGATTCGGGCTCGAAGGTTCAGGCCCGGGCCAAGAGGCCCAGAGAATGCAGCAAGCACCCGGTGTACCACGGCGTACGGAAGCGCAATTGGGGCAAATGGGTCTCGGAAATCCGGGAACCGCGGAAGAAGTCGCGCATCTGGCTCGGAACCTTCGCCACCCCCGAAATGGCGGCGCGGGCCCATGACGTGGCGGCGCTCACCATCAAGGGCCAATCCGCAATCCTGAACTTCCCAAAAATAGCAGGCCTGCTCCCGCGCCCGCTCACGTGCTCCCCGCGTGACATTCAAGCCGCCGCCACCGCCGCCGCCTCCATGTCGAAATTCGACCACGCCGCAACGCAAACCTCGGACTCCGAAACAGAAACTACCGAAGAATCCGAACTGAGCGAGATAGTGGAGCTTCCGAACATCGAGGACAGCTTCGAGTCGTCCGTTGAGTCGTTCGTGACGGTGGACGCGGTGGACAGTTGGATGTTTCCGCCGTTGGAGTCGTTCTGCGCGGCGTTTTCCGATGAGTTATTTCCGCAATTGGGTTGCTTCCCCACCCAGAATGAAATCATTTCGTACACGGTCTGA 633 0.5924 MTQTTTSSETTSSTSSPSSDSGSKVQARAKRPRECSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGQSAILNFPKIAGLLPRPLTCSPRDIQAAATAAASMSKFDHAATQTSDSETETTEESELSEIVELPNIEDSFESSVESFVTVDAVDSWMFPPLESFCAAFSDELFPQLGCFPTQNEIISYTV* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1523 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 186 - -
Pvu10g1523 210 MobiDBLite consensus disorder prediction 26 41 - -
Pvu10g1523 210 MobiDBLite consensus disorder prediction 1 25 - -
Pvu10g1523 210 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Pvu10g1523 210 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Pvu10g1523 210 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 186 - -
Pvu10g1523 210 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Pvu10g1523 210 MobiDBLite consensus disorder prediction 127 148 - -
Pvu10g1523 210 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Pvu10g1523 210 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Pvu10g1523 210 MobiDBLite consensus disorder prediction 1 41 - -
Pvu10g1523 210 CDD AP2 41 97 IPR001471 GO:0003700|GO:0006355
Pvu10g1523 210 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Pvu10g1523 210 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1523 Pvu-Chr10 41789538 41790170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1523 1 180 AP2-EREBP Transcription Factor Family AT5G11590 49.500 1.20e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu10g1523 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1523 K09286 - gmx:100804056 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1523 10 41789538 41790170 Pvu10g1523 10 41789538 41790170 ECH