Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1520 ATGGAAGCGCCGGAGTACTTCGTCGGAGGCTATTATGCGGCCGGAGGAGCTGACCAATTCTCGCAACCGGAGAAGCGCCACGCCGACCAGAAAATCGGCGAGCCTTTCGCCATTGATGATCTCCTCGACTTCTCCCACGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGTAGCCGGGAACTCCACCGACTCCTCCACCGTCACTGCTGTTGACAGCTGCAACTCCTCAATTTCCGGAAGTGACAACCGCTTCGCCGCAGCCATTGTCCCTCGCGGCTTCGGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTACGATGACATGGCGGAACTGGAATGGCTCTCGAACTTCGTTGAAGACTCGTTCTCCGCCGAGGAGGAGTTGAAGACGCTGCAGCTACTCTCCGGCGCCGCGCCGTCCACCGCCATTGGCGCGAAACCGCAGACGCCGGAGTCCTCATCCTCCACCGACACGCTGCCGCCGTTCGCTTCCGACGAAACAGCTCGAAACGCACCGTTTCTCCACTCGGAGACGCCTCTCCCGGGGAAGGCGCGAAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACACGCCTGCTCCACCTAGTAGCGCCGGAGCAGGAGAAGCTGCCTCATACGAAGGCTTCGCCGGTGAAGAAGAGAGAGGGAACGAATGCGGAGTGCTCCGGACGCAAATGCCTCCACTGCGGAGCTGAGAAGACGCCGCAGTGGCGAACGGGACCTATGGGACCGAAAACGCTGTGCAACGCGTGCGGCGTGAGGTTCAAGTCCGGGCGGCTGGTGCCGGAGTACCGTCCGGCGGCGAGCCCGACATTCATGTCGACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGTTGAGGCGGCAGAAGGAGCTACAGCGGCATCAGCATCAGCAACTGATGAGTCAGAGTTCAATTTTCGGCGTATCCAACGGTGGAGATGAGTTCTTGATCCATCCTCATCATCACCATCATCATTGTGGGCCAGATTTTAGACACGTTATTTAG 1044 0.5958 MEAPEYFVGGYYAAGGADQFSQPEKRHADQKIGEPFAIDDLLDFSHADAIMSDGFFDNVAGNSTDSSTVTAVDSCNSSISGSDNRFAAAIVPRGFGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGAAPSTAIGAKPQTPESSSSTDTLPPFASDETARNAPFLHSETPLPGKARSKRSRAAPGDWSTRLLHLVAPEQEKLPHTKASPVKKREGTNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFMSTKHSNSHRKVLELRRQKELQRHQHQQLMSQSSIFGVSNGGDEFLIHPHHHHHHCGPDFRHVI* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1520 347 CDD ZnF_GATA 236 283 IPR000679 GO:0006355|GO:0043565
Pvu10g1520 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 295 - -
Pvu10g1520 347 PANTHER GATA TRANSCRIPTION FACTOR 9 1 347 - -
Pvu10g1520 347 PIRSF Txn_fac_GATA_plant 20 323 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pvu10g1520 347 Pfam GATA zinc finger 237 270 IPR000679 GO:0006355|GO:0043565
Pvu10g1520 347 SMART GATA_3 231 281 IPR000679 GO:0006355|GO:0043565
Pvu10g1520 347 PANTHER GATA TRANSCRIPTION FACTOR 1 347 - -
Pvu10g1520 347 Gene3D - 231 281 IPR013088 GO:0006355|GO:0008270
Pvu10g1520 347 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Pvu10g1520 347 MobiDBLite consensus disorder prediction 144 199 - -
Pvu10g1520 347 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Pvu10g1520 347 MobiDBLite consensus disorder prediction 148 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1520 Pvu-Chr10 41755944 41757494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1520 34 347 C2C2-Gata Transcription Factor Family AT4G32890 47.077 4.34e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu10g1520 GATA 4.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1520 - - gmx:100776605 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1520 10 41755944 41757494 Pvu10g1520 10 41755944 41757494 ECH