Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1507 ATGTGGCAAAGAAGCCACAGATCTTCAGAGGAGAGGAAACTGGAGCTTAGGCTTGGTCCACCTAGTGAAGAGTCTCTCAATGGAAGCATCAAAAAGTGCTTCACAGAAAGAAATGACTCACCACTTACTCTTGGTTACTCCTCAACTCACGAAATTTCAACTTCTGACAAGCCAGGTCCAAGTGGGGCTATGTTAACCACTGCATGGCGTTCCACATCCTACCACCAACACCAGGCTAAACCCAAAGCTCCATCATTTTTTCAACTCCAATCAAGGCCACAAAACATGTTAATGATGAGAAAAGAAGTTCCACAACTTTGTTGTGTAGAGAACATGGCATTCTCACCCTCTTCTGCAGATGCAGCCGTGTCCAAAAGAAGAACTGCTTCAGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCTAAGCTGCCTACTGGGTCCCAACAGCATCAACATGTTGTTCCAGACAACGTTGCTAGCAAAAAACCTGCTCACAACTGTGGCAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGAACATCAATGCTTATAACAGTTATGAAAAACTTTCCTCTGCTGTCGATGAACTCTTTATAGGCCTTCTTGCAGAGATGAAGTTATCTCATATTGCCTCTTCCCAGTCTTGTTCTGCACAAAGAGATTCCAGTGCTGGTGGAATTCAAAACAAGGGAGAGGAACACAAAGAGAAAGCCAACACAGGTTTATTGGTTGGAAGTGGAGATTATACTCTTGTTTATGAGGATAATGAAGGAGACAGCATGCTTGTTGGAGATGTACCTTGGCACATGTTTGTGTCAACAGTTAGGAGGCTGAGGGTGTTGAAGAGTTCTGATCTCCCTGCTTTTACACTTAGTAGTAAGCAAGACTAG 945 0.4381 MWQRSHRSSEERKLELRLGPPSEESLNGSIKKCFTERNDSPLTLGYSSTHEISTSDKPGPSGAMLTTAWRSTSYHQHQAKPKAPSFFQLQSRPQNMLMMRKEVPQLCCVENMAFSPSSADAAVSKRRTASGPVVGWPPIRSFRKNIASGSSSKLPTGSQQHQHVVPDNVASKKPAHNCGKGLFVKINMDGVPIGRKLNINAYNSYEKLSSAVDELFIGLLAEMKLSHIASSQSCSAQRDSSAGGIQNKGEEHKEKANTGLLVGSGDYTLVYEDNEGDSMLVGDVPWHMFVSTVRRLRVLKSSDLPAFTLSSKQD* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1507 314 SUPERFAMILY CAD & PB1 domains 173 298 - -
Pvu10g1507 314 MobiDBLite consensus disorder prediction 1 19 - -
Pvu10g1507 314 MobiDBLite consensus disorder prediction 1 30 - -
Pvu10g1507 314 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 313 IPR003311 GO:0005634|GO:0006355
Pvu10g1507 314 MobiDBLite consensus disorder prediction 236 257 - -
Pvu10g1507 314 Pfam AUX/IAA family 14 304 IPR033389 -
Pvu10g1507 314 ProSiteProfiles PB1 domain profile. 181 301 IPR000270 GO:0005515
Pvu10g1507 314 Gene3D - 176 312 - -
Pvu10g1507 314 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 3 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1507 Pvu-Chr10 41625007 41628589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1507 174 309 B3 DNA Binding Superfamily AT5G20730 24.265 1.82e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pvu10g1507 AUX_IAA 2e-62 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1507 K14484 - gmx:100793822 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1507 10 41625007 41628589 Pvu5g1709 5 39062130 39066140 ECH
Pvu10g1507 10 41625007 41628589 Pvu10g1507 10 41625007 41628589 ECH
Pvu5g1709 5 39062130 39066140 Pvu10g1507 10 41625007 41628589 PCT