Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1487 ATGGATGGTTTGAGTTGGGATACCTCTCAACTTGAAGCAAACACACAAATCCTGTGGAATACTATTCAGTCACCACCAGACTTTGAAGGAGGCTACTCCATGTCCAATGTTCTCAATCAAATACATGAATTGGAGAAAGCTCATGCACACTCATATTCTGAAAGAGTGATTTATCAGTCAGCAGATGCTACCACCACTTCTTCAGAGATAATGGATGAGATGCAAAGGCAAAACACAAATCTTTTACAGCATGCACCAACCATGATGCCAGTGAAATCAGGAACTGGAGCCAGTTGGGGAGAAACTTTCACATCTCAATCATACCCGTCTCTATCGGTCAATGGAGCTCAAAGTATGAACCTGATTAGCAACTACATGCCAGGTTTCAGCATGGCCCACCAACAACAGCAGCAACAACAACTTGTCAAAGGGTCACAAAATGGGAAGGGTACTTGCTCTCTTGAATCTTTTGACTGCTTGATTTCAGCTACCAATAGCAACCCAGACACATCTGTTGAAGATGATGGGATCTCAATGATTTTATCTGACTGTAGAAACTTGTGGAACTTCAGCAGTGGCAGTGCAGCTTCCACTGGTGAATCTGAGAGTAATGCTTCCAATGGTAGAAAGAAAGACATGAAGTGTCCAGTCAATGAAGTTGATGAAACAGTTTCTCAAAGCTCCTTTGATCAAGGAAAAACAGTACAATCAAAGGCTAATTTTTCAAAGAGGAGCCCTGAGGAAACTGAAATGATCAAAGTTGGTGCCACTGGCAGTGGTTCCTGCTTCAGTATTGTTCAGAATTCTTCTTCTATTGAAGAAGGTGGATTCAGACTTATCTCAGATGATCCATCAAAAAGGAAGAAACCCAGATGGGACACGAGTTCCTTTTCAAATAACATCAATTTCCAGCAACCAAATTCATCCAGGTCTTCATCCATTGAGGAGCCTGATCCAGAGGCCATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAACTTTGGCTTGGATGGGGCTGAAAAGCCAAAGAGGAAGAATGTGAGAATATCATCTGATCCACAAACTGTGGCTGCTAGGCATAGAAGGGAGAGAATAAGTGAAAGGATTAGGGTTTTGCAGAAGCTTGTGCCTGGGGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTTAAGGCTCTGGAATGTCTTGGAAACAAAGTTGATGCAATGAATTGTCCTCCTACAAGCATTGCCTTCTCTTTCAACCCTTCATTTCCTGTGCAAACATCTCTCAGTCACATCCATCATTCCCAGGGTTGA 1353 0.4294 MDGLSWDTSQLEANTQILWNTIQSPPDFEGGYSMSNVLNQIHELEKAHAHSYSERVIYQSADATTTSSEIMDEMQRQNTNLLQHAPTMMPVKSGTGASWGETFTSQSYPSLSVNGAQSMNLISNYMPGFSMAHQQQQQQQLVKGSQNGKGTCSLESFDCLISATNSNPDTSVEDDGISMILSDCRNLWNFSSGSAASTGESESNASNGRKKDMKCPVNEVDETVSQSSFDQGKTVQSKANFSKRSPEETEMIKVGATGSGSCFSIVQNSSSIEEGGFRLISDDPSKRKKPRWDTSSFSNNINFQQPNSSRSSSIEEPDPEAIAQMKEMIYRAAAFRPVNFGLDGAEKPKRKNVRISSDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALECLGNKVDAMNCPPTSIAFSFNPSFPVQTSLSHIHHSQG* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1487 450 MobiDBLite consensus disorder prediction 276 317 - -
Pvu10g1487 450 SMART finulus 361 410 IPR011598 GO:0046983
Pvu10g1487 450 PANTHER TRANSCRIPTION FACTOR BHLH87 1 444 - -
Pvu10g1487 450 MobiDBLite consensus disorder prediction 279 293 - -
Pvu10g1487 450 MobiDBLite consensus disorder prediction 194 247 - -
Pvu10g1487 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Pvu10g1487 450 Pfam Helix-loop-helix DNA-binding domain 365 404 IPR011598 GO:0046983
Pvu10g1487 450 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 444 IPR045843 GO:0003700|GO:0006355
Pvu10g1487 450 MobiDBLite consensus disorder prediction 220 242 - -
Pvu10g1487 450 Gene3D - 359 414 IPR036638 GO:0046983
Pvu10g1487 450 MobiDBLite consensus disorder prediction 294 315 - -
Pvu10g1487 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 414 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1487 Pvu-Chr10 41488747 41490099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1487 94 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 46.631 7.26e-82 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g1487 HLH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1487 - - vra:106773034 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1487 10 41488747 41490099 Pvu10g1487 10 41488747 41490099 ECH
Pvu5g1668 5 38687942 38689762 Pvu10g1487 10 41488747 41490099 PCT