Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1480 ATGGCGACAGTTCCAGGGCAGCTCGTGTGGGAGATTGTGAAGAAGAACAACTCCTTTTTAGTGAAACAGTTCGGAAGAGGCACTCAGAGTGTCGAATTCAGCAGAGAGTCCAACAATCTCTACAACCTCAATTCCTACAAATTCTCTGGTTTGGCAAACAAGAAAACTGTTACTGTTCAGCCTGTTGGTAAGGATCTGTCTGTGTTGTTGGCTACGACAAAGACGAAGAAGCAGAACAAGCCTGCTGCGTTGCTCCACAAATCTGTGATGAAGAAGGAGTTCCGTAGGATGGCAAAGGCTGTTGAAAATCAGGTTGCGAATAATTACTACAGACCTGACTTGAAGAAGGCTGCCCTTGCAAGGTTGAGTGTTGTTCACAGAAGCCTCAAAGTTGCCAAGTCTGGTGTCAAGAAGAGGAATAGACAGGCCTTGAAGATCTCTGGTAGGAAGTGA 453 0.4592 MATVPGQLVWEIVKKNNSFLVKQFGRGTQSVEFSRESNNLYNLNSYKFSGLANKKTVTVQPVGKDLSVLLATTKTKKQNKPAALLHKSVMKKEFRRMAKAVENQVANNYYRPDLKKAALARLSVVHRSLKVAKSGVKKRNRQALKISGRK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1480 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Pvu10g1480 150 Gene3D - 6 133 - -
Pvu10g1480 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Pvu10g1480 150 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1480 Pvu-Chr10 41436622 41439608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1480 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.028 3.67e-74 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1480 K02903 - gmx:100499921 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1480 10 41436622 41439608 Pvu5g1661 5 38646304 38648159 ECH
Pvu10g1480 10 41436622 41439608 Pvu10g1480 10 41436622 41439608 ECH
Pvu5g1661 5 38646304 38648159 Pvu10g1480 10 41436622 41439608 PCT