Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1462 ATGGCTTGCTTCGGAAGCACAATAGATAACTTCTCCTGCATTTGCCTTGGAGATTTCAGTTTGGCTTCCTTTTCCAGCCAAAGGTGCATGATAGACACTGTCAACATGTTTTTCCTGTGTGTCTTTTATGTATCATTGCTCTCTAATCTGATCAAGAAAAGACCTGCAAATGCAAGTGGTGGCTACAGAAAGGGATTGGTTCGGGTAGTTACTTCATTCTGTTGTACTATTTTAAGCATTGCATATTTTATGGATGGTTTGTGGAATGTCATAACCAAAACCACAGGCTTCAATCAGCTGAACTTGTTGGTTTGCTTTGTGAGAGGACTAGTTTGGATATCTTTAGCAGCTTCAATTTTTGTTCAAAGGTTTCAATGGATAAAAATATTATGCTCTATTTGGTGGGTGTTTTCATGCACATTGGTTTCAGTACTCAATGCTGAAATTCTGCTCAAAGAGCATAGATTTCAAATTTTTGATATGGCAATGTGGCCAGTGCACATCCTAACTGTTCTCTGTGCCTTCCAAAACCATGGCTACTTTGTCCCACAAGAAATCCCAGGTGCCAGTTTATGTGATCCTCTATTAGTTCATAAGGAAATGCATAAACAAACAGGACTTGGCCATGCCTCCTTTCTCAGCAGATTCACTTTCTCTTGGATGAATGCTTTGCTCAGTTTGGGTTACTCAAAGCCACTGGCACTTGCAGACATCCCTTCTCTTACTTCTGAAGATAAAGCTGAATTTGCATACCAAAAATTTGCACATGCATGGGTTTCCCTTTTGAGAGAAAGGGCCAGTAATAAATCCATAAACTTGGTCCTATGGTCCATAGCCCGAGTTTACATGAAAGAAAATATCTTCATAGCCATTTGCGCATTTCTGAGGACAATTTGTGCTGTTGTTTCTCCTTTACTTGTTTATGCTTTTGTAAACTATTCCAGTTGCAGTGAGGAAGACTTAAAACAAGGAATGATCATAATGGGGTATCTTATATTAGCCAAGGTGGTTGAGTCTGTGTCTCAAAGACATTGGTCTTTTAATTCAAGGAGGTTAGGAATGAAAATGAGATCTGCTTTAATGGCTGCAGTGTATCAAAAGCAATTAAAGCTTTCAGCTTTGGGTAGGAAAAGACATTCAACTGGCGAGATTGTGAATTACATTGCAGTTGACGCATATCGAATGGGGGAATTTCCATGGTGGTTTCATACATTGTTGTTTTCTGCATTGCAACTTTTTCTGGCTCTTGGTGTCCTTTTTGGTGTTGTGGGTCTAGGTGCACTTCCTGGTTTGATGCCACTTCTCATTTGTGGATTTCTCAACGTACCCTTTGCAAAGATCCTTCAAAAACGTAGGTCGGAGTTTATGATTGCACAAGATGAGCGTCTGAGGTCAACTTCAGAGATTCTTAGTTGTATGAAAATCATAAAGCTGCAGTCCTGGGAGGATAACTTCAAGAAGCTAGTTGAATCCCTTCGCGCTAAAGAGTTAAAATGTTTGGCTGAAGTACAGTTCATGAGAGCTTGTGGAACATTTATATATTGGATGTCTCCCACCATCATTTCTTCAGTTATCTTAATGGGATGTGCGCTTTTCACGAGTGCCCCTTTGGATGCTGGAACTATTTTCACAGTTCTTGCAACACTGAGAAGCATGGGGGAACCTGTCATACTGATTCCAGAAGCACTTGCTGTTCTGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAACACCTTTTTGCTTGATGACGAGATAAAAGGTGATGATTTTGGAAGAACATCAAAAGATTCTTGCAGAAAGGGTGTTGAGATTCTAGCAGGCAGCTTCAGTTGGGATCAGCAGCAATCATTGCCTCTAACTTTGAGAGAAGTGAATATTGAGATCAAGTGGGAGCAGACAGTAGCAGTTTGTGGCCCAGTTGGAGCCGGAAAAACATCTCTCCTGCATGCAATACTCGGAGAGATACCCAAAATTTCAGGAACTGTTATAGTAGGGGGAACACTTGCCTATGTTTCCCAGATTCCTTGGATCCAAAGTGGTACAATTCGTGATAATGTTCTGTATGGAAAACCAATGGACCAAACCAGGTATGAATATACCATTAAGGTCTGTGCCTTGGATAAGGATATTGATGGATTTAGCCATGGTGATCTCACAGAAATAGGTGAGAGAGGGATTAACTTGAGTGGTGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTATAATGATGCTGATATCTACCTCCTAGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCCTCTATTCTGTTTAATGATTGTGTCAGGACTGCTTTAAGAAGGAAAACAGTTATTCTCGTGACTCATCAAGTTGAATTTCTCTCAGAAGTTGATAAAATCCTGGTAATGGAAGGAGGAAAAATTAGTCAATGGGGTAGCTATGAAGATCTATTGACTGCTGGAACAGCCTTTGAACAACTTTTGAGTGCTCATAGAGAGGCAATTGCAGGAATAGAAACAAATAGTGCAAACAAAAGAGAAGTTCAAAATGTGGTTACAGTTCAGCCTGAGGATTCTCATGTTTCTAATCTCACTAAATGTGGAAGTGATGGGGAAATTTCTACCCAGATTCAACTCACACAAGAAGAAGAAAAGGAGAGTGGTGATGTTGGGTGCAAGGCATTCTGTGACTATATTTTGTTCCCTAAGGGATCTTTTCTTCTATGTTTAAGCATATTAGCACAGGTGGCTTTTGTAGGTTTGCAAGCTGCATCAACTTCTTGGCTTGCTATAGCCAGTGAGATGTCAAAAGCTTCATCAGATATGAGTATTTTAGATTTCGATATCCCTTTTTCCACCATCTTTGTGATAGCTGAAGTAACAGAACTCCTTACAATGATTGTGATAATGGTTTCGATCACATGGCAAGTGCTCATTGTTGCAGTTCTTGCCATGGTGGCTTCAAAATATATTCAGGGTTATTATCAAGCTTCTGCAAGAGAAATTATGCGAATAAGTGGAACTACAAAAGCTCCTCTTATGAATTTTACGGCTGAGACATATCTTGGTGTGGTTAGTATAAGAGCTTTCAACATGGCTGACAGGTTTTTTAAAAACTACCTTAACCTTGTCGACACAGATGCTGCTATGTTCTTTCATTCCTATGCTGGCATCGAATGGTTAATTCTAAGAATTGAAGTACTTCAGAATTTGACATTCTTCACTGCAGCTTTGCTGCTTGTTCTACTTCCAAAGGGATATGTGGCTCCTGGCCTTGTGGGACTTTCTCTGTCTTATGCTTTTTCACTGAGAGGAACCGTGGTTTATCTGACTCAAATGTTTTGCAACTTATCAAACTATGTGATCTCTGTTGAAAGAATCAAGCAATTCATCCACATACCAGCAGAACCTAGTGCAATTGTAGAGGACAATAGACCACCACCTTCTTGGCCTTCTAAAGGTCGAATAGATCTTCAATCTCTTGAGATTAGATATCGTCCAAATTCTCCATTAGTCCTGAAGGGCATCTCTTGCACGTTTAAAGAAGGGAGTAGAGTTGGAGTTGTAGGAAGAACAGGAAGTGGAAAAACTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTACTAGAGGTGACATTCTTATAGATGGGATTAATATATGCTCAATTGGGCTAAAAGATTTAAGAATAAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGTAGCATTCGAAATAACTTGGACCCTCTAGGCCTGTACTCTGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTCAAGGCAACAATCAGTAGTCTACCAAATCTCTTGGACACTTCTGTGAGTGGTGAAGGGGAAAACTGGAGTGTGGGGCAGCGCCAACTGATATGTCTTGGAAGGGTACTTCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGATTCTGCAACAGATGTTATTCTACAACGAATCATCAGACAAGAATTTTCAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCCACTGTAATAGACAGTGATATGGTCATGGTCCTATCTTATGGGAAACTGGTGGAGTATGACAAGCCTTCAAAGCTTATGGATACTAACTCTTCATTCTCCAAGCTGGTAGCTGAATATTGGTCCCACTGCAACAGGAATTTATCCCCAAAAGACTAG 4200 0.4033 MACFGSTIDNFSCICLGDFSLASFSSQRCMIDTVNMFFLCVFYVSLLSNLIKKRPANASGGYRKGLVRVVTSFCCTILSIAYFMDGLWNVITKTTGFNQLNLLVCFVRGLVWISLAASIFVQRFQWIKILCSIWWVFSCTLVSVLNAEILLKEHRFQIFDMAMWPVHILTVLCAFQNHGYFVPQEIPGASLCDPLLVHKEMHKQTGLGHASFLSRFTFSWMNALLSLGYSKPLALADIPSLTSEDKAEFAYQKFAHAWVSLLRERASNKSINLVLWSIARVYMKENIFIAICAFLRTICAVVSPLLVYAFVNYSSCSEEDLKQGMIIMGYLILAKVVESVSQRHWSFNSRRLGMKMRSALMAAVYQKQLKLSALGRKRHSTGEIVNYIAVDAYRMGEFPWWFHTLLFSALQLFLALGVLFGVVGLGALPGLMPLLICGFLNVPFAKILQKRRSEFMIAQDERLRSTSEILSCMKIIKLQSWEDNFKKLVESLRAKELKCLAEVQFMRACGTFIYWMSPTIISSVILMGCALFTSAPLDAGTIFTVLATLRSMGEPVILIPEALAVLIQVKVSFDRLNTFLLDDEIKGDDFGRTSKDSCRKGVEILAGSFSWDQQQSLPLTLREVNIEIKWEQTVAVCGPVGAGKTSLLHAILGEIPKISGTVIVGGTLAYVSQIPWIQSGTIRDNVLYGKPMDQTRYEYTIKVCALDKDIDGFSHGDLTEIGERGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVRTALRRKTVILVTHQVEFLSEVDKILVMEGGKISQWGSYEDLLTAGTAFEQLLSAHREAIAGIETNSANKREVQNVVTVQPEDSHVSNLTKCGSDGEISTQIQLTQEEEKESGDVGCKAFCDYILFPKGSFLLCLSILAQVAFVGLQAASTSWLAIASEMSKASSDMSILDFDIPFSTIFVIAEVTELLTMIVIMVSITWQVLIVAVLAMVASKYIQGYYQASAREIMRISGTTKAPLMNFTAETYLGVVSIRAFNMADRFFKNYLNLVDTDAAMFFHSYAGIEWLILRIEVLQNLTFFTAALLLVLLPKGYVAPGLVGLSLSYAFSLRGTVVYLTQMFCNLSNYVISVERIKQFIHIPAEPSAIVEDNRPPPSWPSKGRIDLQSLEIRYRPNSPLVLKGISCTFKEGSRVGVVGRTGSGKTTLISALFRLVEPTRGDILIDGINICSIGLKDLRIKLSIIPQEPTLFKGSIRNNLDPLGLYSDDEIWKALEKCQLKATISSLPNLLDTSVSGEGENWSVGQRQLICLGRVLLKRNRILVLDEATASIDSATDVILQRIIRQEFSECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDKPSKLMDTNSSFSKLVAEYWSHCNRNLSPKD* 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1462 1399 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1154 1386 IPR003439 GO:0005524
Pvu10g1462 1399 CDD ABC_6TM_ABCC_D2 935 1127 IPR044726 GO:0140359
Pvu10g1462 1399 Gene3D - 1135 1386 IPR027417 -
Pvu10g1462 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 825 IPR027417 -
Pvu10g1462 1399 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1115 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1462 1399 SMART AAA_5 630 803 IPR003593 -
Pvu10g1462 1399 SMART AAA_5 1178 1371 IPR003593 -
Pvu10g1462 1399 ProSitePatterns ABC transporters family signature. 728 742 IPR017871 GO:0005524
Pvu10g1462 1399 Gene3D ABC transporter type 1, transmembrane domain 917 1133 IPR036640 GO:0005524|GO:0016021
Pvu10g1462 1399 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 602 826 IPR003439 GO:0005524
Pvu10g1462 1399 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 50 930 - -
Pvu10g1462 1399 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 931 1391 - -
Pvu10g1462 1399 CDD ABCC_MRP_domain2 1150 1370 - -
Pvu10g1462 1399 Gene3D - 583 850 IPR027417 -
Pvu10g1462 1399 Gene3D ABC transporter type 1, transmembrane domain 274 582 IPR036640 GO:0005524|GO:0016021
Pvu10g1462 1399 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 50 930 - -
Pvu10g1462 1399 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 931 1391 - -
Pvu10g1462 1399 SUPERFAMILY ABC transporter transmembrane region 275 582 IPR036640 GO:0005524|GO:0016021
Pvu10g1462 1399 SUPERFAMILY ABC transporter transmembrane region 930 1132 IPR036640 GO:0005524|GO:0016021
Pvu10g1462 1399 Coils Coil 478 498 - -
Pvu10g1462 1399 Pfam ABC transporter 621 755 IPR003439 GO:0005524
Pvu10g1462 1399 Pfam ABC transporter 1169 1317 IPR003439 GO:0005524
Pvu10g1462 1399 CDD ABCC_MRP_domain1 602 803 - -
Pvu10g1462 1399 Pfam ABC transporter transmembrane region 287 548 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1462 1399 Pfam ABC transporter transmembrane region 931 1099 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1462 1399 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 287 568 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1462 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1141 1385 IPR027417 -
Pvu10g1462 1399 CDD ABC_6TM_ABCC_D1 288 576 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1462 Pvu-Chr10 41253073 41258832 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1462 596 849 Calmodulin-binding Proteins AT2G36910 28.058 1.24e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1462 - K05665 gmx:100784827 1780.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1462 10 41253073 41258832 Pvu10g1462 10 41253073 41258832 ECH