LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g1460	ATAGCATATGTTTCTCAAACCTCTTGGATACAAAGTGGTACGGTTCAAGATAATATACTCTTTGGCAAGCCGATGGAAAAAACAAGATATGAGAGTGCCATTAAAGTTTGTGCTTTGGATAAAGATATCAATGATTTCAGCCACGGTGATCTTACAGAAATAGGGCAGCGAGGGATTAACTTGAGTGGAGGACAAAAGCAAAGGATTCAACTGGCTCGTGCTGTTTACAATGATGCTGACATTTACCTCCTCGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATCCTTTTCAAAGACTGCGTAATGACGGCTCTAAGAGAGAAAACTGTCATTCTAGTGACACATCAAGTGGAGTTTCTCTCAGAAGTTGATGCAATCCTGGTGATGGAAGGTGGAAAAGTTACTCAATCAGGTAACTATGAGAATCTCTTAACAGCTGGGACTGCCTTTGAACAACTTGTGAGCGCGCATAAGGAAGGAATTAGAGAGTTGGATCAGAATAATGAGAACAAAACTCAGAGAGAAGATTCTGAAGGTGTTTATCTAACTAAAAATCAGAGTGAGGGGGAGATTTCTACTGAGGGTCAACTTGGGATACAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTTGGCTTGAAGACATTATGGGATTATATTTCATTTTCCAGGGGTTCATTGATGCTGTCATGGATACTTTTGGCACAATTTGCTTTTATTGCTTTTCAAACTGCATCAATGGTTTGGCTTGCTTTAGCCATTGAAATTCCAAAAATAACTAGTGCCACCTTGATTGGGGTGTACTCTATAATCTCTTTTGCTAGTCCTGCTTTTATATATGTAAGGTCTCTCTTGACCTCTTACCTCGGATTAAAAGCTTCTAAAGCTTTCTTCACAAGTTTCAATACTGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACGAGAGCTTCATCAGATTTAAGTATTTTGGACTTTGATATACCTTATTCGATCACCTTTGTAGCATCTGTAGCAATTGAAATTTTGGTGATGATTTGTGTAATGGTTTTAGTAACATGGCCAGTTTTCATTGTTGCCATTCCTGCAATAATTGCATCAAAATATGTTCAGGGGTATTATCAAGCCTCGTCAAGGGAGTTGATGAGGATCAATGGAACCACAAAAGCTCCTGTGATGAATTTTGCAGCTGAGACATCACTTGGTGTGGTTACTGTGAGAGCATTTAATATGGTAGAAAGATTTTTTAAGACTTACTTAAAGCTTGTGGACACAGACGCAACACTGTTTTTTCATTCTAATGTGGCCATGGAATGGTTACTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTCATCACTTCAGCTTTGCTACTTATTCTATTTCCTCAGGGATACGTGTCCACGGGCCTTGTGGGACTATCTCTCTCTTATGCTTTAACCTTCACAGCATCCTACACGTTTTGGACTCGATGGTATTGCAATTTGTTAAACTATGTTATATCTGTTGAAAGAATGAAGCAATTCATTCACCTACCATCAGAGCCTCCTGCCATTGTGAAGGACCACCGACCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTAGAGATTAGATATCGTCCTAATGCTCCATTAGTACTTAAGGGTATCACTTGTATGTTTAGAGAAGGGAGTAGAGTGGGAGTTGTGGGAAGAACCGGAAGTGGAAAAAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAACCAGCAAGAGGTGATATTCTTATAGATGGGATTAGCATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTTTAGGCCTGTACTCAGATGATGAGATATGGAAGGCTTTGGAGAAATGCCAGCTTAAGGAAACTATCAGCCATCTACCAAATCTCTTAGACTCTTTGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGACAACTGTTTTGTCTAGGAAGAGTACTGCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCCACTGATGCAATTCTACAAAGAATTATCAGACATGAGTTTGCAGAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAACAGACAGTGACATGGTTATGGTCCTCTCCTATGGGAAAGTGGTGGAATATGATGAACCTTCAAGATTAATGAACACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGGCCAGCTGCAGCAAGAATTCCTCCTCAAATGTTAGTTTGCAGCAACATTGA	2400	0.4042	IAYVSQTSWIQSGTVQDNILFGKPMEKTRYESAIKVCALDKDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTVILVTHQVEFLSEVDAILVMEGGKVTQSGNYENLLTAGTAFEQLVSAHKEGIRELDQNNENKTQREDSEGVYLTKNQSEGEISTEGQLGIQLTQEEEKEIGDVGLKTLWDYISFSRGSLMLSWILLAQFAFIAFQTASMVWLALAIEIPKITSATLIGVYSIISFASPAFIYVRSLLTSYLGLKASKAFFTSFNTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVASVAIEILVMICVMVLVTWPVFIVAIPAIIASKYVQGYYQASSRELMRINGTTKAPVMNFAAETSLGVVTVRAFNMVERFFKTYLKLVDTDATLFFHSNVAMEWLLLRIEALQNLTVITSALLLILFPQGYVSTGLVGLSLSYALTFTASYTFWTRWYCNLLNYVISVERMKQFIHLPSEPPAIVKDHRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCMFREGSRVGVVGRTGSGKSTLISALFRLVEPARGDILIDGISICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISHLPNLLDSLVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRHEFAECTVITVAHRVPTVTDSDMVMVLSYGKVVEYDEPSRLMNTNSSFSKLVAEYWASCSKNSSSNVSLQQH*	800

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g1460	799	ProSitePatterns	ABC transporters family signature.	61	75	IPR017871	GO:0005524
	Pvu10g1460	799	CDD	ABCC_MRP_domain1	1	136	-	-
	Pvu10g1460	799	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	1	159	IPR003439	GO:0005524
	Pvu10g1460	799	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1	158	IPR027417	-
	Pvu10g1460	799	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	537	780	IPR027417	-
	Pvu10g1460	799	CDD	ABCC_MRP_domain2	545	765	-	-
	Pvu10g1460	799	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	1	786	-	-
	Pvu10g1460	799	SUPERFAMILY	ABC transporter transmembrane region	220	529	IPR036640	GO:0005524\|GO:0016021
	Pvu10g1460	799	Pfam	ABC transporter transmembrane region	253	496	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Pvu10g1460	799	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	549	781	IPR003439	GO:0005524
	Pvu10g1460	799	Gene3D	-	530	781	IPR027417	-
	Pvu10g1460	799	SMART	AAA_5	573	766	IPR003593	-
	Pvu10g1460	799	Pfam	ABC transporter	564	712	IPR003439	GO:0005524
	Pvu10g1460	799	Pfam	ABC transporter	1	88	IPR003439	GO:0005524
	Pvu10g1460	799	CDD	ABC_6TM_ABCC_D2	229	522	IPR044726	GO:0140359
	Pvu10g1460	799	Gene3D	ABC transporter type 1, transmembrane domain	200	528	IPR036640	GO:0005524\|GO:0016021
	Pvu10g1460	799	Gene3D	-	1	186	IPR027417	-
	Pvu10g1460	799	PANTHER	NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED	1	786	-	-
	Pvu10g1460	799	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	235	497	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g1460	Pvu-Chr10	41243349	41247151	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g1460	534	779	Calmodulin-binding Proteins	AT2G36910	31.418	7.62e-30	125

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g1460	-		-	pvu:PHAVU_010G1404000	1528.07

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu10g1460	10	41243349	41247151	Pvu10g1460	10	41243349	41247151	ECH