LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g1447	ATGAGCCGCTACGACAGCCGCTCCAGTGACCCTACTTCCTACCGTGACCGGAGGAGTGATTCTGGCCTAGGTGCATCTACAGGGTTTGGTGGTCCTGTACAACACTCTTCATCAAACAAGAGGGATCATGATGATGGTGGGTCACCAAAGAGGAACCTCAGTTTGGATGGTTTACCTCATTTCGAGAAAAACTTCTACATTGAGTCACCGGCAGTAAGGGCAATGACAGATGCTGAGGTTAATGAGTACCGGCAGCAGAGGGAAATAACTGTTGAAGGTCGAGATATCCCCAAGCCTGTCAAAACCTTTCAAGATGCTGGTTTTCCAGAATACGTGTTGCAAGAAATTACAAAAGCTGGCTTTACTGAACCTACACCCATTCAATCTCAAGGTTGGCCCATGGCTTTGAAGGGGCGTGATCTGATAGGAATAGCAGAAACAGGTTCGGGGAAGACACTTGCTTACTTGTTACCTGCCATTGTGCATGTTAATGCTCAGCCGATTCTAGATCCTGGAGATGGACCTATTGTGTTAGTATTGGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAGGCTACTAAATTTGGTGCATCGTCTAGGATTAAGAGTACATGTATCTATGGTGGGGTTCCGAAGGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTCGAAATTGTAATTGCCACTCCCGGAAGGTTAATTGATATGCTTGAATCAAATCATACGAACTTGCAGAGGGTCACATATCTTGTATTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAGCTGCGGAAGATTGTTTCTCAGATTCGGCCGGACCGTCAAACTTTGTATTGGAGTGCTACCTGGCCGAAGGAGGTCGAACAATTGGCACGGAAGTTCCTTTATAACCCATACAAAGTAATTATAGGGTCTGAAGATTTAAAAGCTAACCATGCAATACGTCAATATGTTGACATTGTTTCAGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTAGAGGACATCATGGATGGCAGTCGAATACTGATATTCATGGATACCAAAAAAGGATGTGATCAGATCACTAGGCAACTCCGCATGGATGGCTGGCCTGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTTCTCTCAGAATTTAAATCGGGAAAAAGTCCTATTATGACTGCAACAGATGTTGCAGCCCGTGGTTTAGATGTGAAGGATGTGAAATATGTAATAAATTATGACTTCCCGGGGTCACTTGAGGACTATGTCCATCGCATTGGGCGAACTGGAAGAGCTGGTGCAAAAGGAACTGCCTACACATTCTTCACAGCTGCAAATGCTAGATTTGCAAAGGAACTTATCGCCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCTGCCTTCAGGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTAA	1524	0.4547	MSRYDSRSSDPTSYRDRRSDSGLGASTGFGGPVQHSSSNKRDHDDGGSPKRNLSLDGLPHFEKNFYIESPAVRAMTDAEVNEYRQQREITVEGRDIPKPVKTFQDAGFPEYVLQEITKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSEDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRGAPPLPSGPRGFQDRGRGYGSSRPWS*	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g1447	507	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	253	261	IPR000629	-
	Pvu10g1447	507	MobiDBLite	consensus disorder prediction	477	507	-	-
	Pvu10g1447	507	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	173	456	IPR027417	-
	Pvu10g1447	507	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	335	480	IPR001650	-
	Pvu10g1447	507	Pfam	DEAD/DEAH box helicase	125	296	IPR011545	GO:0003676\|GO:0005524
	Pvu10g1447	507	SMART	ultradead3	120	323	IPR014001	-
	Pvu10g1447	507	Gene3D	-	64	310	IPR027417	-
	Pvu10g1447	507	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	132	307	IPR014001	-
	Pvu10g1447	507	Pfam	Helicase conserved C-terminal domain	332	441	IPR001650	-
	Pvu10g1447	507	SMART	helicmild6	360	441	IPR001650	-
	Pvu10g1447	507	CDD	DEADc_DDX5_DDX17	112	307	-	-
	Pvu10g1447	507	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	54	495	-	-
	Pvu10g1447	507	PANTHER	LD32873P	54	495	-	-
	Pvu10g1447	507	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	101	129	IPR014014	GO:0003724
	Pvu10g1447	507	MobiDBLite	consensus disorder prediction	1	56	-	-
	Pvu10g1447	507	Gene3D	-	311	481	IPR027417	-
	Pvu10g1447	507	MobiDBLite	consensus disorder prediction	1	17	-	-
	Pvu10g1447	507	CDD	SF2_C_DEAD	320	450	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g1447	Pvu-Chr10	41159734	41168198	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g1447	88	461	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.133	2.45e-77	246

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g1447	K12823		-	gmx:100781619	987.638