Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1438 ATGCAGCCGAAATCCCGTTTTTTTGTTCCTCCCCAAAAGGCCGTGAACAACAATAACAACTCCAACACAACCACCACCACCCCCACCTCCTCCACCACCACCAACAACAGAATCTCAACAACAAGAAATGGCAACAGCACCACCCAGGCTTGCGCTGCATGCAAGTACCAACGCAGAAAGTGTGCACCTGACTGCATTCTCGCACCTTACTTCCCCCATGATCGACAGCGCCAGTTTCTCAACGCACACAAGCTCTTTGGCGTAAGCAACATCACCAAGATCATCAAGGTTGTCAGCCCTCACGACAAGGACCAAGCCGTGCGCACCATCATCTACCAATCTGACATGCGCGCCACAGACCCCGTTGGAGGATGTTACAGGTATATTCTGGACCTTCAGGCACAGATTGAGTACTGTCGAGCGGAGCTGGAACTGGTGCTTCAACAACTGGCGATGTTTCGAGCTCAGGCTCAGAATCAGCATCAGTATCAGCAGCAGCACGGGATGTATGCTCCGAACAATGTGAACGTGGCTGTGAATGGAGATGGTGAGGTTTTGAACGCGGATCCGATGGGGTTGTATAGCCAGCAACAGTATCAGTGTCTGCAGCCGCACCAGCAGGAGCAGTATGTTATGATGCACGAAAATGGGAGCCAAAACTGCAACGGCGCCACTCCTTTGCAGGAACAGATCAACACGTGGGCTGTTCAGAACACTGCTGTGTCGCTTTCTTCGTTGTCGTTGCAAGGGCAGAGTAGTAATGTTAGTGATGAGTATGATCACAAGCCCGTCATTGACATTGATTCTGATGAGAGAAGTGAGTTAGGGTTCGAGTCTGAAGAATTAGTCCATCGCAGTGACGAAGCAGTGCTGTTTAAGATAGATGATGCAGTAATAAAAGCTGAGGGTGAGTGCATGCAACAAGCTCAAGATCATGACCTGAAAGGTGCAGCAACATCGTTTAGCCTCACAAACTGTACTTGCTGA 987 0.5005 MQPKSRFFVPPQKAVNNNNNSNTTTTTPTSSTTTNNRISTTRNGNSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKVVSPHDKDQAVRTIIYQSDMRATDPVGGCYRYILDLQAQIEYCRAELELVLQQLAMFRAQAQNQHQYQQQHGMYAPNNVNVAVNGDGEVLNADPMGLYSQQQYQCLQPHQQEQYVMMHENGSQNCNGATPLQEQINTWAVQNTAVSLSSLSLQGQSSNVSDEYDHKPVIDIDSDERSELGFESEELVHRSDEAVLFKIDDAVIKAEGECMQQAQDHDLKGAATSFSLTNCTC* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1438 328 MobiDBLite consensus disorder prediction 11 45 - -
Pvu10g1438 328 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 44 268 - -
Pvu10g1438 328 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 44 268 - -
Pvu10g1438 328 Pfam Lateral organ boundaries (LOB) domain 50 145 IPR004883 -
Pvu10g1438 328 ProSiteProfiles LOB domain profile. 49 150 IPR004883 -
Pvu10g1438 328 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1438 Pvu-Chr10 41055901 41057959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1438 49 167 AS2 family AT3G13850 73.950 2.21e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu10g1438 LOB 6.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1438 - - pvu:PHAVU_010G138500g 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1636 5 38437147 38437665 Pvu10g1438 10 41055901 41057959 PCT