Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1435 ATGGAGATGAAGGGTTTTGTGTTGAAGCAACAGCAAGCAGTGGAGGAGAACATGTCAAACTTGACTTCTGCATCTGGTGAAGCAAGTGCTTCCTCAGGCAACAGAACTGAAATTGGAACCAATTACCCTCAACAACAATACTTGCCTCCACCACCAACTCAGACTCAGCCACCAAAGAAAAAGAGAAACCTCCCTGGTAACCCAGACCCTGATGCTGAAGTTATAGCCTTGTCCCCCAAGAGTCTTCTGGCCACAAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAACCTCCAACTTCACAGAAGAGGGCATAATTTGCCTTGGAAGCTGAAGCAGAGGACAAGCAAAGAGGTGAAGAAGAAGGTGTATGTGTGTCCAGAGGCAAGTTGTGTGCATCATGATCCATCAAGGGCTCTGGGGGACCTGACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCCCATTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAACCAATAACCAACAACCTCTTCCCCCACAACCTTCTTCCTCTCATCACCACCACAACCACATGAGCCTCCAAACCCAGTTCAACCCTCAAAATCTGCATGCCTTCTCAATGAAAAAAGAGCAGCAAAGTTTGAATGTTAGGCCAGAAGTGCCCCCTTGGATGGCCCCATCCATAATGTTCTCTCCTCCACCACACCCAGAAAACCCTAACCCTAGTCTTGGTCCCACTCTTTCTGCCTACCAAACAGTCCCTAGCGCTTCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATCAGCAGAAGTGGCTCCTCGCCAGCCATGGCAAGGGCCCACCACCACCCTCACATGACTTCTTCTGCAGATTCTGCCACTCCTCACTTTGGCTTCAACTTGTCCTCACGTGAAGACACCACCACCACCACCACTTCAACAACAACAGCAAAAACAACCACTGTTGGCTTATTATCATCATCATCACCTTTGGGGAATAAAGCTGCTGCTACTGCTCCATCCCTTCTTCATGATGTTATCAACTCTTTCTCTTCTCCTTCTGCCTTCCAAGGAACCCCTTTTGAGGATGCATTTGGTGGCATTCAGAGTTCAAAGAAACTAGATGATGATGATGATGATAACGATCATAGCTTGTATTTGCATGACACCTTCTCAAAAACAAGTGGTGCAGCTGGAAATGAAGGGTTGACCAGAGATTTCTTGGGTCTTAGGCCCCTCTCTCACACTGATATTCTCACCATTGCTGGCATTGGAAACTGCATTCATCATCACCAAAACCAATCTCAAAACCCATGGCAAGGTTAG 1503 0.475 MEMKGFVLKQQQAVEENMSNLTSASGEASASSGNRTEIGTNYPQQQYLPPPPTQTQPPKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVKKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARTNNQQPLPPQPSSSHHHHNHMSLQTQFNPQNLHAFSMKKEQQSLNVRPEVPPWMAPSIMFSPPPHPENPNPSLGPTLSAYQTVPSASPHMSATALLQKAAQMGATISRSGSSPAMARAHHHPHMTSSADSATPHFGFNLSSREDTTTTTTSTTTAKTTTVGLLSSSSPLGNKAAATAPSLLHDVINSFSSPSAFQGTPFEDAFGGIQSSKKLDDDDDDNDHSLYLHDTFSKTSGAAGNEGLTRDFLGLRPLSHTDILTIAGIGNCIHHHQNQSQNPWQG* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1435 500 MobiDBLite consensus disorder prediction 218 242 - -
Pvu10g1435 500 SMART c2h2final6 164 184 IPR013087 -
Pvu10g1435 500 SMART c2h2final6 88 110 IPR013087 -
Pvu10g1435 500 SMART c2h2final6 129 159 IPR013087 -
Pvu10g1435 500 MobiDBLite consensus disorder prediction 17 73 - -
Pvu10g1435 500 Gene3D Classic Zinc Finger 69 138 - -
Pvu10g1435 500 Pfam Zinc-finger double-stranded RNA-binding 88 110 IPR022755 -
Pvu10g1435 500 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Pvu10g1435 500 Gene3D Classic Zinc Finger 142 222 - -
Pvu10g1435 500 MobiDBLite consensus disorder prediction 17 44 - -
Pvu10g1435 500 SUPERFAMILY beta-beta-alpha zinc fingers 87 184 IPR036236 -
Pvu10g1435 500 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 485 - -
Pvu10g1435 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Pvu10g1435 500 MobiDBLite consensus disorder prediction 346 376 - -
Pvu10g1435 500 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 20 485 - -
Pvu10g1435 500 MobiDBLite consensus disorder prediction 328 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1435 Pvu-Chr10 41038935 41041294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1435 14 358 IDZ Gene Family AT1G55110 57.027 6.33e-125 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu10g1435 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1435 K25870 - gmx:100808344 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1634 5 38414904 38419964 Pvu10g1435 10 41038935 41041294 PCT