Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1427 ATGGGTGGTTCCGGAAGATGGCTTAAGTCTCTCATTTCCCTCAGAAAGCCCTCCACAACTGATCAAGATAAGGGTGGTGACAAGAGTAAGAGAAAGTGGAAGTTATGGAGAGGCACTTCAGAAGGGTTTGGGATTGGATCATCCATGCAGAAGGGGCAGGGTGGTGGTGGGTCCTTTGTGCTGGATGATGGGGCATTTGCTGCTGCTTTGGCTGCTGTTGTAAGAACTCCACTGAAAGACTTCATGGTCATCAAGCAGGAATGGGCTGCCATTCGAATCCAGGCAGTGTTTCGTGGTTTCTTGGCAAGACGAGCTTTGAGGGCCCTGAGGGCAGTGGTGAGGTTGCAATCTATATTTCGTGGTTGGCAAGTGAGGAAGCAAGCAGCTGTTACTCTAAGATGCATGCAGGCTCTTGTGCGAGTTCAAGCACGTGTCAAGGCAAGGAATGTGGGAAAAAATGTCAGTGAGCCCTGCAATGAAGCTGATCCTGTTAAGCAAGCTGAGCAAGGATGGTGTGACATTCCAGGAACTGCGGAAGCAGTTAAGGCAAAATTACTGATGAGGCAGGAAGGAGCAATTAAGAGGGATAGGACAAAGGCATACTCTCAGTCTAGACAGAAATCATCAGTGAGTGCTAGTCCAAACTCAAAAGCTGCTAAGTCAGTGATTCCTCTCAAGCACCGCAGTCTAGACGGTAAGAGCTCAGGATGGGGCATGTTAGATCGCTGGATGTCTGCAAAACCATGGGAGAGCAGGTCGATGGTAGACACATATTTGGACTCATCTGACATGACTCCAGTGACTAGTAAAAGTGATCATTTTGTTCTTCCCTTTAATTCTAATCAACAAAATGGCTCAGTCAAAACAAGAAAGAACGGTGTGACAACCAGGATTTCATCTAAATCACTTACAACTAGTCAGTCAACTCCATCATCTTCATCCATAAGCTCTGAATGCATGTATGATGATAGCCCTTTGTCAACTTCATGCACATCTGAATCACCACCTGTACCATCTACCAACAATGTTATGATGGAAGAAACAGAGGAAGGAAATGTTTGTAAACCAAGCTACATGAACCTGACAGCATCAACCAAAGCTAAACTGAAACCCTATAGGTGTTTTTCTCAGAATTCTAAGAGAATCTTTATGGATGATTGTGTGTCACTTAATGGAGTTACTAGAAGCAGTTCTGGTTCCTATCCTTCTGCTAATATGTGGAAGAATATCTATGCAACACCTTTAAGAACACGTTATCAAAAGCGATATACAATGGAAGATAAGTAG 1287 0.4444 MGGSGRWLKSLISLRKPSTTDQDKGGDKSKRKWKLWRGTSEGFGIGSSMQKGQGGGGSFVLDDGAFAAALAAVVRTPLKDFMVIKQEWAAIRIQAVFRGFLARRALRALRAVVRLQSIFRGWQVRKQAAVTLRCMQALVRVQARVKARNVGKNVSEPCNEADPVKQAEQGWCDIPGTAEAVKAKLLMRQEGAIKRDRTKAYSQSRQKSSVSASPNSKAAKSVIPLKHRSLDGKSSGWGMLDRWMSAKPWESRSMVDTYLDSSDMTPVTSKSDHFVLPFNSNQQNGSVKTRKNGVTTRISSKSLTTSQSTPSSSSISSECMYDDSPLSTSCTSESPPVPSTNNVMMEETEEGNVCKPSYMNLTASTKAKLKPYRCFSQNSKRIFMDDCVSLNGVTRSSSGSYPSANMWKNIYATPLRTRYQKRYTMEDK* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1427 428 MobiDBLite consensus disorder prediction 203 218 - -
Pvu10g1427 428 Gene3D - 84 137 - -
Pvu10g1427 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 128 IPR027417 -
Pvu10g1427 428 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Pvu10g1427 428 Pfam IQ calmodulin-binding motif 110 127 IPR000048 GO:0005515
Pvu10g1427 428 MobiDBLite consensus disorder prediction 276 342 - -
Pvu10g1427 428 SMART iq_5 108 129 IPR000048 GO:0005515
Pvu10g1427 428 SMART iq_5 85 107 IPR000048 GO:0005515
Pvu10g1427 428 PANTHER IQ-DOMAIN 5-RELATED 1 427 - -
Pvu10g1427 428 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
Pvu10g1427 428 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 427 - -
Pvu10g1427 428 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Pvu10g1427 428 MobiDBLite consensus disorder prediction 196 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1427 Pvu-Chr10 40967277 40970081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1427 1 411 IQD Protein Family AT1G72670 43.387 4.66e-89 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1427 - - vun:114166337 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1625 5 38349236 38351690 Pvu10g1427 10 40967277 40970081 PCT