Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1422 ATGTTCAAAGAGTACACAATTGGACTGTTTGAAATGCTACAATGGCTTGTACATTTCTTACTTCTCTTTTGTTCCTTCCAAAATCTCGGTTATTTTGTTGCATCCCAAAGTAACCAAGAAGACAATACTAGTTTATCTGAGCCTCTGATTGCTCAGAAAGTTGAAACTACACAAACACAACTAGGGCGTGCTACCCTTCTGAGTAAGTTGACTTTCTCTTGGGTTAATTCTTTACTCAGACTGGGTTACTCAAAGCTACTAGCTCTTGAAGATATCCCATTTCTTCTTCCTGAAGATGAAGCTAACTTGGCCTACCAAGCTTTTATGCATGCATGGGAACCCCTTGTAAGGGATAATAGCAATAACAACAACAAAAACTCGGTTCTTTGGTCTGTTGCTAGAACCTTCTCCAAGGAGAACATATTAATAGCATTTTATGCATTACTCAGAAGTATTTGCATGATAATTTCTCCTCTAATACTATATGCTTTTGTAAACTACACAAATAACACTGAGGCAGATCTCATAGAAGGTTTTTCCATACTGGGTTTTATGGTTCTCAGCAAAGTGGTTGAATCTCTGTGTCAGAGACATTACAGTTTTGGCTCAAGGAGATCAGGAATGAAAATTAGATCAGCTCTGATGGTGGCAGTGTATCAGAAACTGCTAAAGCTTTCCAGTTCAGCAAGGACAAGGCACTCAACTGGAGAAGTTATGAATTACATTGCAGTTGATGCATATCGATTGGGAGAATTTCCATTGTGGTTTCATATAACATGGACTTCCGCAGTTCAACTTGTTTTGTCCATCATTATCCTTTTTAGTGTTGTGGGTGCTGGTGCTCTTCCAGGTTTAGTCCCTCTTCTCATCTGTGGACTTCTGAATGTACCATTTGCACAGATCATACACAATTGTCAGTCACAATTCATGATGGCACAAGATGAGCGTCTCAGATCAACTTCAGAAATTCTAAATAGTATGAAAATCATCAAGTTACAATCCTGGGAAGATAAATTCAAGAACATAGTTTTGTCCCTACGTGCTAAAGAATTCAAATGGTTGACTAAGGTACAGATCATAAAAGCCAATGGGGCATTTCTATATTGGATGAATCCCACCATTGTTCCTACTGTTGTTTTCCTTGGGTGTGCTCTTTTCAAAAGTGCCCCACTGAATGCTGGGACCATTTTCACAGTTATTACAACATTGAGGATAATGGGAGAACCTGTTCGAATGATCCCAGAGGCTCTATCTATTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATACCTTTTTGCTTGATGAAGAGCTAAGTAGTATTAATGGTTATGGAAGAAATATAAAGCAGAGTTCAGTTAATGCAGTGGAAATCCAGGAAGGCAACTTCATTTGGGATCATGAATCAGTGTCCCCAACTTTAAGAGAGGTGAAGTTAGAAATCAAATGGGGACAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCTGTACTTGGAGAAATTCCCAAGATCTCAGGAACTGTTAATGTTGGTGGCACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGGGATAATATACTTTTTGGAAAGCCAATGAACAAAACCAGATATGAGACTGCCACTAAAGTTTGTGCCTTAGATATGGATATTAATGATTTTAGCCATGGTGATCTTACTGAAATAGGCCAGCGAGGCATTAACATGAGTGGAGGACAAAGGCAAAGGATTCAACTAGCTCGAGCAGTTTATAATGATGCTGATATCTATCTCCTTGATGACCCATTCAGTGCAGTTGATGCACAAACAGCTGCTATTCTGTTCCATGACTGTGTCATGACTGCTTTAAGAGAGAAAACAGTCATTCTTGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACGATCCTGGTAATGGAGGATGGAAAAGTTACTCAATCAGGAAGTTATAAAGATCTCCAGTCCTCTGGCACTGCCTTTGAACAGCTTGTGAGTGCCCATAAAGCTGCATTAATAGGATTGGATAAAAAATATGAAAATACTAGTGATTCTGATATTGAATTTATGGTACATCCTGAAGAATCTCAAAGTTTTAATCTCACTAAAAATCAAAGTGAGGAGGTGATTTCTACCAAGGGACAACTTGGGGCACAACTTACCCAAGAAGAAGAAAAAGTGATTGGTGCTGTTGGGTGGAAACAATTCTGGGACTATATTTCATTTTCCAGGAGTTCATTCCTGTTTTGTTTAACCATGTTAGCAGAATTTGCTTTTATTGCTTTGCAGACTGCATCATCGTATTGGCTTGCTCTAGCTATTGAAATTCCAAAAGTAACCAGTGGCATTTTGATAGGAGTTTACGCATTATTTTCATTTCTTAGTGCTATATTTATATATATAAGGTCTTTCCTAGCTGCTAATCTTGGATTAAAAGCTTCTGAAGCCTTCTTCTCAAGTTTCACATCATCTATGTTCAATGCTCCGATGTTGTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCCTCAGATTTAAGTATTTTGGACATTGATATTCCTTATTCTCTCACTATAGTATCATTTGTAGCATCTGAAATTCTAGTGACAATATGTGCAATGGTATCCATCACATGGCAAGTTCTTATTGTTGCTGTTCCGGCTACAGTGGCATCAATATACATTCAGGGATATTATCAAGCCTCTTCAAGGGAATTGATGAGGATAAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCTGCCGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTGAACATGGTGAACAGATTTTTCAACAACTACCTAAAGCTTGTGGACATGGATGCAGCAGTGTTCTTTCACTCTAATGTGGCCACAGAATGGTCAATTTTAAGGATTGAAATACTTCAAAACTTGACAGTATTCACAGCAGCTTTATTACTGATTCTACTTCCCAGGGGATCTGTATCATCTGGTCTTGTGGGATTGTCTCTTTCTTATGCGTTGACACTAAAAGAATCCCAAGTATTTTGGAGTAGGATGTTTAGCATGTTGTCAGACCATATCATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCATCAGAGCCTCCTGCCATTGTGGAGGATAACAGACCTCTATCTTCATGGCCATCAAAGGGTAGGATCGATCTTCGAGGGCTAGAGATTAGATATCGTCCAAATGCTCAATTAGTTCTCAAGGGTATAAATTGTACGTTTGCAGAAGGGAGTAGAGTGGGAGTTGTTGGAAGGACTGGAAGTGGCAAAACTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAACCTTCAAGAGGTGATATTCTAATAGATGGGATCAACATATGCTTGATGGGGTTAAAGGATTTGAGAACGAAGCTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACCAACTTGGACCCTCTAGGCTTCTATCAAGATGATCAAATATGGAAGGCTTTAGAGAAATGTCAGCTAAAGGAAACAATCAGCAAGCTACCAGGTCTCTTGGACTCTTCTGTGAGTGACGAAGGTGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGCCTTGGTAGAGTACTACTTAAGAGGAACAGAATACTGGTCCTAGATGAAGCTACTGCGTCCATCGACTCTGCAACAGATGCCATTCTACAACAAGTGATAAGACAAGAATTTGCAGAATGCACAGTCATAACTGTGGCTCACAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTGTCTCATGGGAAACTAGTGGAATATGACGAGCCTTCGAAACTTATGGGGACCAACTCTTGGTTCTCGAATTTGGTTGCTGAATATTGGTCAAGCTGCAGGAAGAACTCATCGCCAAATATTAGCAGGAAGCAACATTGA 3987 0.3965 MFKEYTIGLFEMLQWLVHFLLLFCSFQNLGYFVASQSNQEDNTSLSEPLIAQKVETTQTQLGRATLLSKLTFSWVNSLLRLGYSKLLALEDIPFLLPEDEANLAYQAFMHAWEPLVRDNSNNNNKNSVLWSVARTFSKENILIAFYALLRSICMIISPLILYAFVNYTNNTEADLIEGFSILGFMVLSKVVESLCQRHYSFGSRRSGMKIRSALMVAVYQKLLKLSSSARTRHSTGEVMNYIAVDAYRLGEFPLWFHITWTSAVQLVLSIIILFSVVGAGALPGLVPLLICGLLNVPFAQIIHNCQSQFMMAQDERLRSTSEILNSMKIIKLQSWEDKFKNIVLSLRAKEFKWLTKVQIIKANGAFLYWMNPTIVPTVVFLGCALFKSAPLNAGTIFTVITTLRIMGEPVRMIPEALSIMIQVKVSFDRLNTFLLDEELSSINGYGRNIKQSSVNAVEIQEGNFIWDHESVSPTLREVKLEIKWGQKIAVCGPVGAGKSSLLYAVLGEIPKISGTVNVGGTIAYVSQTSWIQSGTVRDNILFGKPMNKTRYETATKVCALDMDINDFSHGDLTEIGQRGINMSGGQRQRIQLARAVYNDADIYLLDDPFSAVDAQTAAILFHDCVMTALREKTVILVTHQVEFLSEVDTILVMEDGKVTQSGSYKDLQSSGTAFEQLVSAHKAALIGLDKKYENTSDSDIEFMVHPEESQSFNLTKNQSEEVISTKGQLGAQLTQEEEKVIGAVGWKQFWDYISFSRSSFLFCLTMLAEFAFIALQTASSYWLALAIEIPKVTSGILIGVYALFSFLSAIFIYIRSFLAANLGLKASEAFFSSFTSSMFNAPMLFFDSTPVGRILTRASSDLSILDIDIPYSLTIVSFVASEILVTICAMVSITWQVLIVAVPATVASIYIQGYYQASSRELMRINGTTKAPVMNFAAETSLGVVTVRALNMVNRFFNNYLKLVDMDAAVFFHSNVATEWSILRIEILQNLTVFTAALLLILLPRGSVSSGLVGLSLSYALTLKESQVFWSRMFSMLSDHIISVERIKQFIHIPSEPPAIVEDNRPLSSWPSKGRIDLRGLEIRYRPNAQLVLKGINCTFAEGSRVGVVGRTGSGKTTLISALFRLVEPSRGDILIDGINICLMGLKDLRTKLSIIPQEPTLFKGSIRTNLDPLGFYQDDQIWKALEKCQLKETISKLPGLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQQVIRQEFAECTVITVAHRVPTVIDSDMVMVLSHGKLVEYDEPSKLMGTNSWFSNLVAEYWSSCRKNSSPNISRKQH* 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1422 1328 CDD ABCC_MRP_domain1 457 657 - -
Pvu10g1422 1328 ProSitePatterns ABC transporters family signature. 582 596 IPR017871 GO:0005524
Pvu10g1422 1328 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1078 1310 IPR003439 GO:0005524
Pvu10g1422 1328 SUPERFAMILY ABC transporter transmembrane region 129 434 IPR036640 GO:0005524|GO:0016021
Pvu10g1422 1328 CDD ABC_6TM_ABCC_D1 142 430 IPR044746 GO:0140359
Pvu10g1422 1328 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 1321 - -
Pvu10g1422 1328 Gene3D - 1059 1309 IPR027417 -
Pvu10g1422 1328 Gene3D - 432 698 IPR027417 -
Pvu10g1422 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1065 1309 IPR027417 -
Pvu10g1422 1328 Pfam ABC transporter transmembrane region 761 1022 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1422 1328 Pfam ABC transporter transmembrane region 141 407 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1422 1328 SMART AAA_5 1102 1294 IPR003593 -
Pvu10g1422 1328 SMART AAA_5 484 657 IPR003593 -
Pvu10g1422 1328 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 5 1321 - -
Pvu10g1422 1328 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 459 680 IPR003439 GO:0005524
Pvu10g1422 1328 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 764 1023 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1422 1328 Gene3D ABC transporter type 1, transmembrane domain 128 431 IPR036640 GO:0005524|GO:0016021
Pvu10g1422 1328 CDD ABCC_MRP_domain2 1074 1294 - -
Pvu10g1422 1328 Pfam ABC transporter 1093 1241 IPR003439 GO:0005524
Pvu10g1422 1328 Pfam ABC transporter 475 609 IPR003439 GO:0005524
Pvu10g1422 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 679 IPR027417 -
Pvu10g1422 1328 CDD ABC_6TM_ABCC_D2 760 1051 IPR044726 GO:0140359
Pvu10g1422 1328 SUPERFAMILY ABC transporter transmembrane region 749 1058 IPR036640 GO:0005524|GO:0016021
Pvu10g1422 1328 Gene3D ABC transporter type 1, transmembrane domain 726 1057 IPR036640 GO:0005524|GO:0016021
Pvu10g1422 1328 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 141 422 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1422 Pvu-Chr10 40931256 40937920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1422 457 684 Calmodulin-binding Proteins AT2G36910 27.049 2.37e-20 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1422 - - pvu:PHAVU_010G136900g 2552.32