Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1420 ATGAGTTCCTTCATGAAAAAGCACGACGTGTTTGTGAGCTTTAGAGGAGAGGACACACGAAGCAGCTTCATCAGCCATCTTTACAAAGCTCTCAAAGATAACTCAATCGGAGCCTACATAGATTGCCTGCTCGACAGAGGAGAAGATGTCTGGCCAGCACTTGCCAAAGCAATCCAGGACTCGCATGTTTCAATTGTTGTTTTCTCCGAAAGCTATGCTTCTTCCAAATGGTGTTTGCAAGAGCTAGTGAAAATTCTTGAATGCAGAAAACAACTGGGTTTGGTAGTTATACCTGTCTTTTATAACGTGGATCCATCAGACATAAGGAATCAGAAGGGTAGTTATGAGAAGGCATTGGAGGAGCTGTTGGAATCCAACGAAGAGAAAGTTCCAAAGTGGAAAGCTGCTCTCACTGAAGCTGCCAATATATCTGGATGGGACTCCCGGACACATAGGGACGAGTCTCATGTCATTGAGAATGTTGTCAATGATATATTGCAAAAGCTTCATCTGCGATGCCGTAGTGAATTAAAGGGCCTTGTTGGAAATGAAGAAAATTGCAGAAATGTAGAAGTGTTACTAAAATCATGTAGGGTCATAGGAATTTGGGGTATGGGTGGAATTGGTAAGTCTACCATTGCTAAAGTTTTGTTTGCTGAACACTTTCCCCAATATGACCATGTCTGCTTTGTGGCCAATGCAAGAGAATATTTGCTGGATAAACTTTTCTCTACACTATTGAAGAAAGAAGTTTCCGCAACAAATGTCATAGGATCATCGTTTCATATGAGGAGACTCAGTAGTAGAAAGGTTTTCATTGTACTTGATGATGTTGACATGGATAGTTTAGAGCTATTGGAGTATTTATGTGGAGAGTTTGAAGACCGGCACAGCGATAGTAAACTTGTTATAACAACAAGAGATAGACAATTGCTTGTTGGAAGGGTTGATGCGATATACCATGTTCAGGAATGGAAGAAAACAGAATCTCTAAAGCTTTTTTGCTCAGAAGCCTTTAAGAAAAGTTATCCTGAACGAGGTTATGAGAGTCTCTCAGAAAGTGCAGTTGAATATGCCGGTGGCATTCCACTAGCTCTTAAAGTTTTGGGTTCATATCTTCGTTCAAAAGGAATCAATTTTTGGCAAAGTACTATAAGAAAACTCAGCTTGTATCCTAACGAGAGAATTCAGAAAGTGTTAGAAGTGAGCTACACTGCATTACATGATCTAGAAAAGAATATGTTTCTAGACATTGTGTTTTTTTTCAAAGAAAAACAGAAAGATAATGTCATAAGGATACTGGATGCCTGTGGTTTTGAAGCAACTAGTGGAATAGAAGTTCTAGCAGACAAAGCTTTGTTAACAATTTCATATACAAACATAATACAAATGCATGATTTGCTGCAACAAATGGGTTTGGAGATTGTACGTCAAGAATGTACAGCAGATCCTGGCAGACGTAGTCGCTTGAAGGATAATGAAGCTCGTGAAGTGATTAAAGAAAACAAGGGAACTGATGCAATTCAAGGAATAGAACTGGATTTGTCTAAAGTTAAAAATTTACCTTTGCATTCTGACACATTTACAAAGATGAAAACCTTGAGATTTCTGAAATTCTATAACTCCTCAGGTGAGAGTTCTAGTAATACATACCTTGACCTTCCTGCAACTCTTGACCCATTTTCTGATAAACTGAGGTACATTGAGTGGATTGGATACCCTTTTGAGTCTCTTCCATCACCTTTTTCTGCAAAGCTTCTTGTCGAGATTCACATGCCACATAGCAAAGTAAAACAACTTTGGAAGGGAATCCAGGAACTAGATAATTTAGAGGGAATTGACCTAAGTGAATGCAAACAGTTTAAAGAGCTTCCAGATTTGTCCAAGGCACCAAGACTTAAATGGGTGAATCTCTCATGTGTTGAAAGTTTGCGGTATCTTCACCCATCTGTTTTATCCTCGGCCACACTTGTTACTTTGATACTGGATGGGTGTACAAAACTCAAGAGTGTCAAAGGTGAAAAGCGTTTAAAATCTCTAGAGAAGATCAGTGTCAATGGCTGCTTAAATCTGGAGGAATTTGCAGTGTCATTAGATTTACTTAAAATATCGAATATGAACAACAGAGGAATCCAAATGTCAGGCACATCAGTAAGGCGAAAGCGTTGTCCTTTGGAGGAGTCATTTTGCTTGACATATCTCAAGAAGATGAAGCTAGTTGATAGTGGACTACTTGTGAAGGATTTGATTAACTACAAACTACCTTCCATCAAATATTTGTACATGCTAAATCTAGATGAATGCAGTATGAGAACGTTGCCTGAAACCATTAAGAATTTTGGATATTTGAGAATTTTGTCCCTGGAGAATTGTAACCAGCTTCTGCATCTGCCAAAGCTTCCATCCAGCATCAATTACTTGGGTGCCATTAACTGCACATCATTGGTGACAGTGTCAAACTTAGTCAATTTAGCAGAAGCGATGTGGGGAAGTACCAGATTCATTACATTCAAGAACAGCTTGAAATTGGATGAACATTCATGCAAACTTCTTATGGAGAGCGTACAGTTAATAATGGTGTCTGCTGCATTTGACAACATGGTGAGAAAATCCCATGACCTCCACGGCTACAGTTATAACAGTGTTGAACTTTGTGTACCAGGAAGCAGGGTCCCACACCAGATCAAATATTGGAGCACTGAGTGCTTCATTACCATTGACCTTCCCAAACTTTCCAACTTGAGGGGCTTCATTTACTCTGTGGTTCTTTCTCCATCTGGTGAAACGAAGAAGCATGCCACTAGGATTATATGTAAACGCCACTTAAGAGAAAATACAAGGGAATCATGGGTATCTAGTGATATTGAGGGATTGAACACAGATCATGTTTATGTATGGTATGATCCATTCCACTGTGATGGCATTTTCAAATATAATGAGCCAAGTGTTTGTTTTGAGTTCTGTGTTACAAATGATAAGGGGGAAGTTGATGGCTTCATGTGTATTAAAGAGTGTGGTGTTGGAGTTATAGGTGTTTCAGAACTGCTTAGTGTTTTAGGAGAGTTGGACTGGGATTCGGATAAGAAGAAGAACTTAGTGAAGAGAGTGGAGTTGATAGCACAGGACAAAGGATAA 3135 0.392 MSSFMKKHDVFVSFRGEDTRSSFISHLYKALKDNSIGAYIDCLLDRGEDVWPALAKAIQDSHVSIVVFSESYASSKWCLQELVKILECRKQLGLVVIPVFYNVDPSDIRNQKGSYEKALEELLESNEEKVPKWKAALTEAANISGWDSRTHRDESHVIENVVNDILQKLHLRCRSELKGLVGNEENCRNVEVLLKSCRVIGIWGMGGIGKSTIAKVLFAEHFPQYDHVCFVANAREYLLDKLFSTLLKKEVSATNVIGSSFHMRRLSSRKVFIVLDDVDMDSLELLEYLCGEFEDRHSDSKLVITTRDRQLLVGRVDAIYHVQEWKKTESLKLFCSEAFKKSYPERGYESLSESAVEYAGGIPLALKVLGSYLRSKGINFWQSTIRKLSLYPNERIQKVLEVSYTALHDLEKNMFLDIVFFFKEKQKDNVIRILDACGFEATSGIEVLADKALLTISYTNIIQMHDLLQQMGLEIVRQECTADPGRRSRLKDNEAREVIKENKGTDAIQGIELDLSKVKNLPLHSDTFTKMKTLRFLKFYNSSGESSSNTYLDLPATLDPFSDKLRYIEWIGYPFESLPSPFSAKLLVEIHMPHSKVKQLWKGIQELDNLEGIDLSECKQFKELPDLSKAPRLKWVNLSCVESLRYLHPSVLSSATLVTLILDGCTKLKSVKGEKRLKSLEKISVNGCLNLEEFAVSLDLLKISNMNNRGIQMSGTSVRRKRCPLEESFCLTYLKKMKLVDSGLLVKDLINYKLPSIKYLYMLNLDECSMRTLPETIKNFGYLRILSLENCNQLLHLPKLPSSINYLGAINCTSLVTVSNLVNLAEAMWGSTRFITFKNSLKLDEHSCKLLMESVQLIMVSAAFDNMVRKSHDLHGYSYNSVELCVPGSRVPHQIKYWSTECFITIDLPKLSNLRGFIYSVVLSPSGETKKHATRIICKRHLRENTRESWVSSDIEGLNTDHVYVWYDPFHCDGIFKYNEPSVCFEFCVTNDKGEVDGFMCIKECGVGVIGVSELLSVLGELDWDSDKKKNLVKRVELIAQDKG* 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1420 1044 SUPERFAMILY "Winged helix" DNA-binding domain 395 480 IPR036390 -
Pvu10g1420 1044 Gene3D - 167 317 IPR027417 -
Pvu10g1420 1044 Gene3D Ribonuclease Inhibitor 489 857 IPR032675 -
Pvu10g1420 1044 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 899 IPR044974 GO:0006952
Pvu10g1420 1044 Pfam Leucine Rich Repeat 587 605 IPR011713 -
Pvu10g1420 1044 Gene3D - 5 166 IPR035897 -
Pvu10g1420 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 418 IPR027417 -
Pvu10g1420 1044 Pfam NB-ARC domain 199 404 IPR002182 GO:0043531
Pvu10g1420 1044 Pfam TIR domain 7 175 IPR000157 GO:0007165
Pvu10g1420 1044 SUPERFAMILY L domain-like 513 821 - -
Pvu10g1420 1044 Coils Coil 108 128 - -
Pvu10g1420 1044 Gene3D - 325 408 IPR042197 -
Pvu10g1420 1044 SMART till_3 7 143 IPR000157 GO:0007165
Pvu10g1420 1044 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 146 IPR035897 -
Pvu10g1420 1044 ProSiteProfiles TIR domain profile. 6 169 IPR000157 GO:0007165
Pvu10g1420 1044 PANTHER NB-ARC DOMAIN PROTEIN 6 899 - -
Pvu10g1420 1044 PRINTS Disease resistance protein signature 199 214 - -
Pvu10g1420 1044 PRINTS Disease resistance protein signature 265 279 - -
Pvu10g1420 1044 PRINTS Disease resistance protein signature 359 373 - -
Pvu10g1420 1044 PRINTS Disease resistance protein signature 605 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1420 Pvu-Chr10 40910714 40918304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1420 3 811 WRKY Transcription Factor Family AT4G12020 31.862 7.65e-86 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1420 - - pvu:PHAVU_010G136700g 2091.23