Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1418 ATGGAAACTCGAGTTGGGAACAAGTTCCGTCTCGGTCGGAAAATTGGCAGCGGATCCTTCGGGGAGATCTATCTCGGAACTAATTTTCAGACGAATGAAGAGGTTGCGATTAAGCTTGAAAGTGTCAAAACCAAGCACCCTCAACTGTTGTATGAATCTAAGCTGTATAAAATACTGCAAGGAGGAAATGGGATTCCAAATGTGAAATGGTACGGTGTTGAAGGAGAGTACAATATCCTCGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTGTTCAACTTCTGTAGTCGGAAATTGTCTCTCAAAACTGTTCTTATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTTCATTCCAAATCATTTTTACATCGCGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTTTATGTCATTGACTTTGGCCTAGCTAAGAAATATAGAGACACTACTACACATCAGCATATCCCTTACAGAGAGAACAAGAATTTGACAGGAACTGCTAGGTATGCTAGTATGAATACTCATCTAGGAATTGAGCAAAGCCGCAGGGATGATTTAGAGTCACTTGGATATGTTCTTATGTACTTTTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTACGAGAAGATTAGTGAGAAGAAAGTTACTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGCCGATCACTGAGGTTTGATGACAAACCAGATTATGCTTATTTGAAAAGACTTCTGCGTGACCTTTTCATTCGTGAAGGGTTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAAGTGCCACTGCCCCTGCCCGTGCCATTGGTCCTCCTGCTGCTGGACCAAGTTCAGGCGTGCCACCACTGGCTGCAAATGCTGATGGACAGTTAGGTGGAGAGGATGGTAGGCATAATAATTGGTCTTCATCAGATCCTACTCGTAGGAGAAACCCTGTACCTTTTGCTAATGATGGAGTGTTATCGAGGCAAAAGAGCCCAGTTACATTTGACTCGACTCTATCTAAAGATGTTACGTTGTCAAGTTCTAATTTTTTCCGGCCAATTGGATCTGCAAGGCGAGGTGGTGTCTCAGGCAGCCGAGAATCCCGTGATGTGGTTGTTGGCAGTGAGAGTGAGGTTTCTCGTCCTCTGACCCTGGATTCAAGTCAGGGAGCACTTCGTAAAATGTCTGTTCCTGGTGCTCAGAGAAGTTCAGCGATTACGTCATCTGAGCAGAACCGTACATCCACTGGCAGAAACACATCAAACGTAAAGAATTTGGAGACAACTCTTAGGGGTATTGAGAGCCTACATTTCAATGAAGAGAGGGTACATTATTAG 1440 0.4333 METRVGNKFRLGRKIGSGSFGEIYLGTNFQTNEEVAIKLESVKTKHPQLLYESKLYKILQGGNGIPNVKWYGVEGEYNILVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKYRDTTTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVTTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQSATAPARAIGPPAAGPSSGVPPLAANADGQLGGEDGRHNNWSSSDPTRRRNPVPFANDGVLSRQKSPVTFDSTLSKDVTLSSSNFFRPIGSARRGGVSGSRESRDVVVGSESEVSRPLTLDSSQGALRKMSVPGAQRSSAITSSEQNRTSTGRNTSNVKNLETTLRGIESLHFNEERVHY* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1418 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Pvu10g1418 479 MobiDBLite consensus disorder prediction 388 409 - -
Pvu10g1418 479 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1418 479 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1418 479 MobiDBLite consensus disorder prediction 434 459 - -
Pvu10g1418 479 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Pvu10g1418 479 MobiDBLite consensus disorder prediction 429 459 - -
Pvu10g1418 479 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Pvu10g1418 479 MobiDBLite consensus disorder prediction 335 349 - -
Pvu10g1418 479 PANTHER CASEIN KINASE-RELATED 1 463 - -
Pvu10g1418 479 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 463 IPR030509 GO:0004672|GO:0005524
Pvu10g1418 479 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1418 479 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Pvu10g1418 479 MobiDBLite consensus disorder prediction 304 363 - -
Pvu10g1418 479 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1418 Pvu-Chr10 40890559 40894989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1418 11 212 Receptor kinase-like Gene Family AT1G67720 28.571 1.22e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pvu10g1418 Pkinase 3.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1418 K02218 - gmx:100787808 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1621 5 38303900 38305563 Pvu10g1418 10 40890559 40894989 PCT