Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1414 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAAGATCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTAAGTAACGGTTCTCAAGGCTCTAAAGACAAACCTAGGATTCCCAAGCTCAAGGCTCTTCCTGCTCCTCCTTCTGCTACCACCTCCTCCACCACAACCGCCACCTCTCAAAACGCCGCTCCTGTTCCTCAAAACCGACCTTCTGATGTCGCTGTCCCTGATTCTTCTCCGAATGACCAAGATGTCAAAAACCCTCCGAGGTACAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCGGACCTAAATGCCATTGTTACTTTCATCGAGCAAAAACATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAAATAAAAAAAGATGTTTCCTCAGGGACAAAATCACCTCCACCAAAACCAAAGGATGTTCGGCCACTGCAGCTACAACCACAACGGCAACCCCCAACTTCTGTCTTTACGGCGTCTAACGCCACAGTAAAGGAAGCTGCAGATACTGCCGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATACCTGGCTGCGGAAGCAATAAAGGAGGCAGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTGCAGCTAGCAAAAGACATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCCTAA 870 0.4575 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRIPKLKALPAPPSATTSSTTTATSQNAAPVPQNRPSDVAVPDSSPNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVTFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDVSSGTKSPPPKPKDVRPLQLQPQRQPPTSVFTASNATVKEAADTAAYRVADAESKSYLAAEAIKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1414 289 MobiDBLite consensus disorder prediction 189 220 - -
Pvu10g1414 289 Pfam linker histone H1 and H5 family 123 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu10g1414 289 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Pvu10g1414 289 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 288 - -
Pvu10g1414 289 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu10g1414 289 Gene3D - 2 58 - -
Pvu10g1414 289 Gene3D - 118 206 IPR036388 -
Pvu10g1414 289 SUPERFAMILY "Winged helix" DNA-binding domain 121 201 IPR036390 -
Pvu10g1414 289 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Pvu10g1414 289 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu10g1414 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Pvu10g1414 289 PANTHER SINGLE MYB HISTONE 4 1 288 IPR044597 GO:0003691
Pvu10g1414 289 SMART sant 4 59 IPR001005 -
Pvu10g1414 289 MobiDBLite consensus disorder prediction 80 120 - -
Pvu10g1414 289 CDD H15 123 207 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu10g1414 289 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Pvu10g1414 289 CDD SANT_TRF 6 56 - -
Pvu10g1414 289 MobiDBLite consensus disorder prediction 53 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1414 Pvu-Chr10 40873526 40876694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1414 1 289 Single Myb Histone (SMH) Gene Family AT1G72740 48.443 1.83e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu10g1414 Linker_histone 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1414 K09422 - gmx:780537 417.927