LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g1413	ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAAGATCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTAAGTAACGGTTCTCAAGGCTCTAAAGATAAACCTAGGGTTCCTAAGCTCAAGGCTCTTCCTGCTCCTCCTTCTGCTACTACCTCCTCCACCACCACCACCACTCTTCAAAACGCGGCTTCTGCTCTTCAAAACGCACACTCTGATGTCGCTGTCCCTGATTCTTCTCTGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCGGACCTAAATGCCATTGTTACTTTCATCGAGCAAAAACATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAAATAAAAAAGGATGTCCCCTCCGGAACAAAATCACCTTTACCAAGACCAAAGGATGTCCGACCAGCACCGTCACAACCACAACCACAACCACAATGGCAATCCTCAGCTTCTGTCTTTACAACATCTAATGAGACAGTAAAGGAAGCTGCAGATACTGCAGCCTACAGAATTGCCGATGCTGAAAGTAAATCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTGCAGCTAGCAAAAGACATATATGAACAATGTTCTCGCGGTGAAATTATCCTTTTGGCTTAA	882	0.4433	MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRVPKLKALPAPPSATTSSTTTTTLQNAASALQNAHSDVAVPDSSLNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVTFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDVPSGTKSPLPRPKDVRPAPSQPQPQPQWQSSASVFTTSNETVKEAADTAAYRIADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA*	294

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g1413	293	Gene3D	-	2	58	-	-
	Pvu10g1413	293	PANTHER	SINGLE MYB HISTONE 4	1	292	IPR044597	GO:0003691
	Pvu10g1413	293	Pfam	linker histone H1 and H5 family	123	182	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Pvu10g1413	293	Pfam	Myb-like DNA-binding domain	5	56	IPR001005	-
	Pvu10g1413	293	SUPERFAMILY	Homeodomain-like	2	58	IPR009057	-
	Pvu10g1413	293	SUPERFAMILY	"Winged helix" DNA-binding domain	121	199	IPR036390	-
	Pvu10g1413	293	SMART	h15plus2	119	184	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Pvu10g1413	293	CDD	H15	123	181	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Pvu10g1413	293	ProSiteProfiles	Myb-like domain profile.	1	57	IPR001005	-
	Pvu10g1413	293	Gene3D	-	118	201	IPR036388	-
	Pvu10g1413	293	ProSiteProfiles	Linker histone H1/H5 globular (H15) domain profile.	121	189	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Pvu10g1413	293	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	62	IPR017930	-
	Pvu10g1413	293	PANTHER	TELOMERE REPEAT-BINDING FACTOR 4-RELATED	1	292	-	-
	Pvu10g1413	293	SMART	sant	4	59	IPR001005	-
	Pvu10g1413	293	MobiDBLite	consensus disorder prediction	189	223	-	-
	Pvu10g1413	293	MobiDBLite	consensus disorder prediction	56	91	-	-
	Pvu10g1413	293	CDD	SANT_TRF	6	56	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g1413	Pvu-Chr10	40864398	40867684	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g1413	1	293	Single Myb Histone (SMH) Gene Family	AT1G72740	47.782	7.45e-85	254

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Pvu10g1413		Linker_histone	2.6e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g1413	K09422		-	gmx:778177	427.172