Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1387 ATGGACTCGCGCACGTATAATCCACGCACTGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGGAGAGCTGCTCTCATCAAAGCCCTTACCACTGATGTTGAAGATTTCTACAACCAATGTGATCCTGAGAAGGAGAATCTCTGCTTGTATGGCTTTCCCAGTGAACAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCTGAGCTTCCTGAGCCCGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATAGCATTCTATTTTGGAGCCAGATTCGGGTTTGATAAAGCTGACAGGAAACGGCTTTTCAACATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAACCTTCTGTTTCAAACCACAGTGGCAGCAAGTCGAAGTCCAGCTCTAAGCAACGGGCTCCGGAATCTCAGAGTAGACAGTCAAAGCCATTGCAACAACCAAAAGAAGAGGATGAAGATCTGGAAGAACAAGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGTAAATGTGTGAAGATTACCCCAGCTAGGGCAGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAAGAGAGCTCGCCCTTGA 762 0.4528 MDSRTYNPRTVEEVFRDFKGRRAALIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKPSVSNHSGSKSKSSSKQRAPESQSRQSKPLQQPKEEDEDLEEQDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1387 253 MobiDBLite consensus disorder prediction 144 193 - -
Pvu10g1387 253 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
Pvu10g1387 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Pvu10g1387 253 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 5 253 - -
Pvu10g1387 253 Pfam PHD-finger 200 249 IPR019787 -
Pvu10g1387 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Pvu10g1387 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Pvu10g1387 253 PANTHER CPG BINDING PROTEIN 5 253 IPR045104 GO:0006355|GO:0042393
Pvu10g1387 253 SMART PHD_3 199 247 IPR001965 -
Pvu10g1387 253 MobiDBLite consensus disorder prediction 149 176 - -
Pvu10g1387 253 CDD PHD_AL_plant 199 249 IPR044104 -
Pvu10g1387 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1387 Pvu-Chr10 40524082 40528108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1387 6 252 Alfin-like Transcription Factor Family AT3G42790 76.518 1.35e-127 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pvu10g1387 Alfin 8.4e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1387 - - gmx:100170700 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1387 10 40524082 40528108 Pvu5g1609 5 38224578 38229423 ECH
Pvu9g0827 9 12945490 12948309 Pvu10g1387 10 40524082 40528108 ECH
Pvu10g1387 10 40524082 40528108 Pvu10g1387 10 40524082 40528108 ECH
Pvu5g1609 5 38224578 38229423 Pvu10g1387 10 40524082 40528108 PCT