Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1386 ATGAAGAACTTAATTGAGAAAGGCTCTGGTTCTACCCATTTAGCAGCTCCTTATGCTCTTGGATGCACATCATGGGGGACTTCCTCTGAATCTAATGTTCAACAATCATCCATGTCCAGAGGTTTGACCTTGAAAATGAGTGTTCTGCCGCAACAATGCCATAAGACTAAGCCATTGAATTTTCAATACCAAGACCGAGATTCATCTTCATCTCAATCAACTGGTCAGTCTTATCAGGAAGTTGGTTCAGCGCAATCAGGTCAAATTTCAGTCCAGTGTAGCAATTCTTCTGCTTGTTCAACACTTAACACAACTGGGAGAAAGAGTGTGGAAGGTGCCATCAGGTCTGTTGTGCGGGGTCAGGATTTCACCTTCCCTCCTTCACAACTGTGTCACAACCAACCACTTGCTCATGCTGCTTTCCACCTTGTTGAGCCGTGCTTTAGTGGCCTACTAGCTTCTCCATATGGGCCACAGCCTAACATTCATCCTGCTCAACTGATAGGAATGGCTACTGCTAGAATTCCACTGCCACTTGATCTTAGTGAAGAGCCTATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGCAGGCAATACCGTGCAAAACTTGAAGCACAGAACAAACTCATCAAAGAAAGGAAACCATATCTTCACGAGTCTCGCCATCTACATGCAATGAAGAGAGCTAGAGGTTCTGGTGGTCGCTTCTTGAATACCAAAAAGCTTGAAGAGTCTAAACCCACTTCAGCTAACCATGCTGCAGATGTTTCAAGCTGTACTCGATTGAATCTGAGGGGAAACATGTCAGAATCTAGGAGGGTGGTTCTAGTGGAGAAGTTGAACTACAGAGATGGTGCTTCCACAACAACCTCTTCCGATATCACTACTGCATCTAATAGTGGTGATGTCTTCCAACAACATCAATCAGAATTTAGATTATGTGGTTACCCTTCTCATATTGGAAGGAACATGCAGGGTTACTCTTCTGATATGGGTGGTGGTGGTGGAAACCAACACCGTCTATCAGTCCTTATGTGA 1047 0.4432 MKNLIEKGSGSTHLAAPYALGCTSWGTSSESNVQQSSMSRGLTLKMSVLPQQCHKTKPLNFQYQDRDSSSSQSTGQSYQEVGSAQSGQISVQCSNSSACSTLNTTGRKSVEGAIRSVVRGQDFTFPPSQLCHNQPLAHAAFHLVEPCFSGLLASPYGPQPNIHPAQLIGMATARIPLPLDLSEEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHAMKRARGSGGRFLNTKKLEESKPTSANHAADVSSCTRLNLRGNMSESRRVVLVEKLNYRDGASTTTSSDITTASNSGDVFQQHQSEFRLCGYPSHIGRNMQGYSSDMGGGGGNQHRLSVLM* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1386 348 MobiDBLite consensus disorder prediction 60 81 - -
Pvu10g1386 348 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 20 315 - -
Pvu10g1386 348 SMART cbf3 181 242 IPR001289 GO:0003700|GO:0006355
Pvu10g1386 348 ProSitePatterns NF-YA/HAP2 subunit signature. 187 207 IPR018362 GO:0003677|GO:0016602
Pvu10g1386 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 184 239 IPR001289 GO:0003700|GO:0006355
Pvu10g1386 348 PRINTS CCAAT-binding transcription factor subunit B signature 185 207 IPR001289 GO:0003700|GO:0006355
Pvu10g1386 348 PRINTS CCAAT-binding transcription factor subunit B signature 216 239 IPR001289 GO:0003700|GO:0006355
Pvu10g1386 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 20 315 IPR001289 GO:0003700|GO:0006355
Pvu10g1386 348 Gene3D - 182 243 - -
Pvu10g1386 348 ProSiteProfiles NF-YA/HAP2 family profile. 182 242 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1386 Pvu-Chr10 40514377 40518943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1386 1 346 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.659 3.41e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pvu10g1386 CBFB_NFYA 3.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1386 K08064 - gmx:100500765 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1386 10 40514377 40518943 Pvu10g1386 10 40514377 40518943 ECH
Pvu5g1608 5 38220036 38222927 Pvu10g1386 10 40514377 40518943 PCT