Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1376 ATGTGCTCCAGCATAGTTGTGATCGAATTGGTTGTTGTTGTGCTCATAGTTATCGTCAACCATATCATGACACGGCTCTATGCCAATTCTCATTCGATTACCTTCCACTACAAGGCTGCAGAAGGCACAAACCAGACTGAATGTGTTATCTGCTTGACAAGTTTTGAAGAAGAGGAAAGTGTACGGAAGCTTCACACTTGCAAGCACATCTTCCACACCTTATGCATTGACAAGTGGCTTGGCTCTCATTCAGGTTGTCCACTGTGCCGCACTCAGATTGATAAAGTGAATTCCCAAAACAGTAGAGTAGCTTTGGAAGAAAATGATCACATGATCATGGTCATTGTGAACTCCTGA 357 0.4314 MCSSIVVIELVVVVLIVIVNHIMTRLYANSHSITFHYKAAEGTNQTECVICLTSFEEEESVRKLHTCKHIFHTLCIDKWLGSHSGCPLCRTQIDKVNSQNSRVALEENDHMIMVIVNS* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1376 118 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 29 111 IPR044675 -
Pvu10g1376 118 Pfam Ring finger domain 47 90 IPR001841 -
Pvu10g1376 118 SMART ring_2 48 89 IPR001841 -
Pvu10g1376 118 SUPERFAMILY RING/U-box 34 96 - -
Pvu10g1376 118 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 29 111 - -
Pvu10g1376 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 100 IPR013083 -
Pvu10g1376 118 ProSiteProfiles Zinc finger RING-type profile. 48 90 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1376 Pvu-Chr10 40278603 40279192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1376 32 104 C3H Transcription Factor Family AT5G17600 48.000 1.38e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1376 - K19038 gmx:102661636 181.8