Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1358 ATGGGAAGAAGACCCTGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGATGAAACTCTCTCCAAATATGTTGCCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGTGGAAAAAGCTGCAGACAAAGGTGGCTGAACTATCTCAAGCCTGGTATTAAAAGAGGTGACATCTCAGTGGATGAAGAAGATATGATTATCAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAATCTGTCAAAGAAGTTACAGAAACACCCTACATCATCATCCTCTGTCTCTTCACTTCAACACAAACGTGGAGAAGAAGAGAAGATGAAGCAAGTGCATGTAGCACCAGAAGCTCCACGCCCTAGGAGAGTTAGTGCAGTTGAATACAGTAAAATGTGTAGTACCACTCCCAGTCCTTCAAATAAAGTGGAGGGTAGTAGTGATGAAGCTTGTTTTAGTGATTTCCTCATCGATATTGATCAAAACCAGTTGTTGATTGGTGATGATTCCAGCTCCAAGGTCCCACAAACAGATGAAGAGCAGAACAACAAACAGGTAGTCTTAACCAACAGTCCTAGCTCATCATCACCTTCTCATCATTGTCACAATCTCTTGGCAGAGAAATTCGACCCTCTGGAGACCCTCTTGGATGTGGAACTCAAGAGGATGGCTTCCTTTCTTGGACTTGAAAATGATTGA 786 0.4326 MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKHPTSSSSVSSLQHKRGEEEKMKQVHVAPEAPRPRRVSAVEYSKMCSTTPSPSNKVEGSSDEACFSDFLIDIDQNQLLIGDDSSSKVPQTDEEQNNKQVVLTNSPSSSSPSHHCHNLLAEKFDPLETLLDVELKRMASFLGLEND* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1358 261 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pvu10g1358 261 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 257 - -
Pvu10g1358 261 Gene3D - 69 142 - -
Pvu10g1358 261 MobiDBLite consensus disorder prediction 129 146 - -
Pvu10g1358 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Pvu10g1358 261 PANTHER MYB TRANSCRIPTION FACTOR 1 257 - -
Pvu10g1358 261 CDD SANT 15 60 IPR001005 -
Pvu10g1358 261 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Pvu10g1358 261 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pvu10g1358 261 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pvu10g1358 261 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pvu10g1358 261 SMART sant 12 62 IPR001005 -
Pvu10g1358 261 SMART sant 65 113 IPR001005 -
Pvu10g1358 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Pvu10g1358 261 Gene3D - 10 66 - -
Pvu10g1358 261 MobiDBLite consensus disorder prediction 114 128 - -
Pvu10g1358 261 MobiDBLite consensus disorder prediction 114 150 - -
Pvu10g1358 261 CDD SANT 70 111 IPR001005 -
Pvu10g1358 261 MobiDBLite consensus disorder prediction 196 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1358 Pvu-Chr10 40076883 40078388 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1358 1 179 MYB Transcription Factor Family AT4G09460 50.000 4.87e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu10g1358 Myb_DNA-binding 6.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1358 K09422 - gmx:547568 429.483