Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1357 ATGGGAAGAAGTCCTTGTTGTTCTAAAGAAGGTTTGAACAAAGGAGCATGGACAGCTCTGGAAGATAAAATTCTGACAGAATACATTAACATCCATGGCGAAGGAAAATGGAGACACCTGCCCAAAAGAGCAGGTCTTAAGAGATGCGGAAAAAGTTGCAGACTGAGATGGTTGAATTATCTCAGGCCTGGCATCAAGAGAGGTAACATCACTAATGATGAAGAGGAGCTCATTATACGGCTTCACAATCTTCTTGGAAACAGGTGGTCTTTGATTGCTGGAAGGCTTCCGGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAACATAGGAAGGAAACTTCAAAATGGCACCCCAGGATGCTCCATTACAAATGGTGGTGCAGGAAGCACTTTAAACACAGTTCAGCATGATGAAAACGTTAAGAACCAAGAATGGCACTACGATAAGGGTTCGTGTCTTGTTCAGACTAAAGCAACAAGGTGGACTAAGGTCACAGTCACTAACGAAATTAGTCAACACAATGAAAACAGTAAGACCAATAATGTTGGTGATCATAGCAAAATGAAGGCTTTTCTAGTGTCTCCGTCTTCAGAGAGTAACAATGACCCAGTGTTGAATTTCATGGAAAATCTTGAGATGGATGGCAATTTCTTCTCGGAGCTAATGAATATGGATTTGCCTGAATCATCTTGTCAAGGAAATAATATACTTGAAGATAATGATAACCATTGTTCGGTGGATAAAGGGTATTTATCTCCAAAGTCATCCAGTGATACCACTCACTTTCCTTGGGGTGATTCACTATATGACCCAAATTTTGATTTTCTACCAGTGACAACTTTTATGGAGTCCGGATTTGATTGGCTATGA 879 0.4039 MGRSPCCSKEGLNKGAWTALEDKILTEYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGTPGCSITNGGAGSTLNTVQHDENVKNQEWHYDKGSCLVQTKATRWTKVTVTNEISQHNENSKTNNVGDHSKMKAFLVSPSSESNNDPVLNFMENLEMDGNFFSELMNMDLPESSCQGNNILEDNDNHCSVDKGYLSPKSSSDTTHFPWGDSLYDPNFDFLPVTTFMESGFDWL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1357 292 SMART sant 66 114 IPR001005 -
Pvu10g1357 292 SMART sant 13 63 IPR001005 -
Pvu10g1357 292 CDD SANT 16 61 IPR001005 -
Pvu10g1357 292 Gene3D - 14 66 - -
Pvu10g1357 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu10g1357 292 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pvu10g1357 292 Gene3D - 70 146 - -
Pvu10g1357 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu10g1357 292 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 252 - -
Pvu10g1357 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu10g1357 292 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 252 - -
Pvu10g1357 292 CDD SANT 71 112 IPR001005 -
Pvu10g1357 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu10g1357 292 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pvu10g1357 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1357 Pvu-Chr10 40062049 40063327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1357 1 116 MYB Transcription Factor Family AT2G16720 75.862 9.12e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu10g1357 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1357 K09422 - gmx:100804950 497.278