Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1354 ATGAGTAACTGGTTGGGGTTCTCTCTGACTCCACACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCGTGGAGGAGGAGGAGGAGGTGGAGGAGAAGGAGGAGGGTATCATCCTCGTCCTTCTTCTCACCCTCACATGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTGTGTGTTGCTGACTCCTTCACCCACTCTGCTGCTCATCAAGAATGGAGATATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAAAAGGTCCAAAGCTTGAGGACTTTTTGGGCTGCTACTCAAACTCCCCCAATAAAGTCTTTTGTCAAGATTCTCAACATGACCAAAACCAAAGCCAGAGCAATGTTTCCAAAATCAATGTTAATGTGGCACCAAGCTTTTGCACCAATGCCGAGATTGAAACTGGGGATTGCCTCACAAACCCTTCTTCCCTGCTTCAATCTTTCCATGCATACAGTGATAACCCACATGCCCTTATCCCGACCAATGGCATGTACAAGTCCTGGTTGGCACAAACTCAGTTTTCTGATGTAAAGCCATCAACTGAGGCAAATGGGTGTAATTTCCAATCACTGTCCCTCACTATGAGCCCCACTGTGCAGAATGGGGTGGGTGCAATTTCCCCTGTTCAAGCTATTGAGGACAATAGGAAACGGGCTATGGCTAAATCTCATGCTAGGGAACCAGTTCCTCGCAAATCTATTGACACTTTTGGGCAGAGAACCTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAACAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGTCTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTGACAAGGCACCACCAACATGGAAGGTGGCAGGCCCGAATCGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTCAGTACTCAAGAAGAAGCTGCTGAAGCATACGACATTGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGTTCCACTCTCATTGCAGGAGATCTTGCAAAACGGTCCCCAAAAACAGAATCACCAGCTGCTGTTGCTGCGGATGACATCAACACAAGCAGTTCTTCTGTGCCGACTCAGCCACCTCCCTTGGCAATAACTGAAGGTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGGCAACGCTGATGAGCAAGCACATAATGAGAGTGCTAGCATCAACAATATCACTGAATCATCACAGCAAGTTTCTCCAAGCAACAGCAAGGTTGGTTTGAACCCTGAAAGTCCCCCAAAGTGTTCTGTGGGGCTACCCAATGAGTTTGGAGTGAGTGGAACAGACTATGGACATGGGTACTTCACCCTGGATGGACCAAAATATGATGATGGGAACAATGAAAACGACCACATGAGCAGCAGCAGGCTTGGAAATATGGGACTTGTTAATCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1743 0.4601 MSNWLGFSLTPHLRIDEEFGRENQERGGGGGGGGEGGGYHPRPSSHPHMSVMPLRSDGSLCVADSFTHSAAHQEWRYDSAIGGGNSNEKGPKLEDFLGCYSNSPNKVFCQDSQHDQNQSQSNVSKINVNVAPSFCTNAEIETGDCLTNPSSLLQSFHAYSDNPHALIPTNGMYKSWLAQTQFSDVKPSTEANGCNFQSLSLTMSPTVQNGVGAISPVQAIEDNRKRAMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKTESPAAVAADDINTSSSSVPTQPPPLAITEGEHSDELSNMMWNGNADEQAHNESASINNITESSQQVSPSNSKVGLNPESPPKCSVGLPNEFGVSGTDYGHGYFTLDGPKYDDGNNENDHMSSSRLGNMGLVNQVPMFALWNE* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1354 580 Gene3D AP2/ERF domain 353 413 IPR036955 GO:0003700|GO:0006355
Pvu10g1354 580 Gene3D AP2/ERF domain 250 319 IPR036955 GO:0003700|GO:0006355
Pvu10g1354 580 CDD AP2 352 413 IPR001471 GO:0003700|GO:0006355
Pvu10g1354 580 SUPERFAMILY DNA-binding domain 352 413 IPR016177 GO:0003677
Pvu10g1354 580 PRINTS Ethylene responsive element binding protein signature 252 263 IPR001471 GO:0003700|GO:0006355
Pvu10g1354 580 PRINTS Ethylene responsive element binding protein signature 393 413 IPR001471 GO:0003700|GO:0006355
Pvu10g1354 580 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 497 - -
Pvu10g1354 580 MobiDBLite consensus disorder prediction 20 53 - -
Pvu10g1354 580 MobiDBLite consensus disorder prediction 445 461 - -
Pvu10g1354 580 ProSiteProfiles AP2/ERF domain profile. 251 317 IPR001471 GO:0003700|GO:0006355
Pvu10g1354 580 MobiDBLite consensus disorder prediction 498 517 - -
Pvu10g1354 580 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 4 497 - -
Pvu10g1354 580 ProSiteProfiles AP2/ERF domain profile. 353 411 IPR001471 GO:0003700|GO:0006355
Pvu10g1354 580 CDD AP2 250 319 IPR001471 GO:0003700|GO:0006355
Pvu10g1354 580 SUPERFAMILY DNA-binding domain 250 319 IPR016177 GO:0003677
Pvu10g1354 580 MobiDBLite consensus disorder prediction 433 467 - -
Pvu10g1354 580 MobiDBLite consensus disorder prediction 498 515 - -
Pvu10g1354 580 Pfam AP2 domain 352 403 IPR001471 GO:0003700|GO:0006355
Pvu10g1354 580 Pfam AP2 domain 251 309 IPR001471 GO:0003700|GO:0006355
Pvu10g1354 580 SMART rav1_2 353 417 IPR001471 GO:0003700|GO:0006355
Pvu10g1354 580 SMART rav1_2 251 323 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1354 Pvu-Chr10 40027019 40030846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1354 1 436 AP2-EREBP Transcription Factor Family AT1G72570 50.641 1.85e-138 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pvu10g1354 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1354 K09285 - gmx:100805489 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1354 10 40027019 40030846 Pvu10g1354 10 40027019 40030846 ECH