Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1346 ATGATCATGGAACCAAATCCAACATCAGATCATAGTCTGGACTGGTTTGAAGGTTCTGTTTCTTTCTTTCCACTTCCACCATTCTTAGACGATCCATATAACTCTAGTGACATCCAAGAGTATCAGCTGTGGGATCAAGACATAAGCAGCCAGTATCAAACTGATGCTAATATCAGCTCCCCTAATGTCACCAACATTGCTACTAGCATACCACCCCCAGAGCCTTGTGGCTCTAACAACCTTAAACTCTCTGATTTGCCCAAGAAAAGAAGTTCCACTGATGATTCAAGTCTCAGACCACCTCAAAGCCACAAGCACAAGAAAATCAAGAGCAAACCAATGAATAATGAAGCAGATAGTGGAGAAGCAGAAGGGACAACAACAGTTAGAAAAGCTGGTGGGAACAAGAAAGGTGCTGCTAAGGGTGTGGCAAATAACTGCAACAACAAGGAAGGAAGGTGGGCTGAACAGTTGCTCAACCCTTGTGCTGCAGCCATAACTGGTGGAAATCTGACCCGTGTGCAACATCTCTTGTATGTTCTCCATGAGTTAGCATCACCTACGGGTGATGCTAACCACAGGCTTGCAGCACATGGTCTTAAAGCACTCACACACCACTTATCATCTTCTCTAGCATCTACCTCTTCAGGGTCCCATACTTTTGCATCTACTGAGCCACGGTTCTTCCAAAAGACACTACTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCTTTTCCGAACAACATAGCAAATGCTTCCATCCTTCAGGTTCTTGGGGAAGACAATGACAATTCACGCACCCTTCACATCCTTGACATTGGAGCCTCTCATGGCATGCAATGGCCAACATTTCTAGAGGCCTTGAGTCGAAGACCTGGTGGACCTCCCCCACTGGTTCGCCTCACTGTGGTCACTGCTTCTTCCACTGAAATTGACACCCCATTTTCTATTGGTCCTGCTGGTGACAACTTCCCATCTAGACTCCTTGGTTTTGCTCAGTTAATGAACGTTAATTTGCAGATTAAAAGGCTAGATAATTGTCCATTACATACACTGAGTGCTCAAAGTGTTGACACCTCCCCGGATGAAATCTTTGTTGTGTGTGCACAGTTTAGGCTGCATCAGTTAAGTCACAATACCAGTGACGAAAAGAGTGAGTTTCTGAAAGTTCTGAGAAACATGGAGCCCAAAGGGGTGATACTAAGTGACAACAACATGGAATGTTGTTGCAATTGTTGTGGGGATTTTGCCACCGGATTCTCTCGAAGGGTGGAGTACTTGTGGAGGTTTTTGGACTCAACAAGCTCAGCCTTCAAGGGTCGTGACAATGATGAAAGGAAAGTGATGGAAGGTGAGGCGGCAAAGGCATTGATAAACCAACGAGAGATGAATGAAGGGAAGGAAAAATGGTGTGAGAGAATGAAAGAAGCCGGGTTTGTGGGAGAAGTACTTGGTGAGGATGCAATAGATGGAGGTAGAGCTTTGCTGAGAAAGTATGATAGTAATTGGGAGATGAAACTCGAAGGTGACAATAGAAGTGTAGGACTGTGGTGGAAGGGGCAACCTGTTTCTTTCTGTTCCTTGTGGAAGCTGGATGGGAATGATCAGAGCTCAACATTCACATCATGA 1629 0.4506 MIMEPNPTSDHSLDWFEGSVSFFPLPPFLDDPYNSSDIQEYQLWDQDISSQYQTDANISSPNVTNIATSIPPPEPCGSNNLKLSDLPKKRSSTDDSSLRPPQSHKHKKIKSKPMNNEADSGEAEGTTTVRKAGGNKKGAAKGVANNCNNKEGRWAEQLLNPCAAAITGGNLTRVQHLLYVLHELASPTGDANHRLAAHGLKALTHHLSSSLASTSSGSHTFASTEPRFFQKTLLKFYEVSPWFSFPNNIANASILQVLGEDNDNSRTLHILDIGASHGMQWPTFLEALSRRPGGPPPLVRLTVVTASSTEIDTPFSIGPAGDNFPSRLLGFAQLMNVNLQIKRLDNCPLHTLSAQSVDTSPDEIFVVCAQFRLHQLSHNTSDEKSEFLKVLRNMEPKGVILSDNNMECCCNCCGDFATGFSRRVEYLWRFLDSTSSAFKGRDNDERKVMEGEAAKALINQREMNEGKEKWCERMKEAGFVGEVLGEDAIDGGRALLRKYDSNWEMKLEGDNRSVGLWWKGQPVSFCSLWKLDGNDQSSTFTS* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1346 542 Pfam GRAS domain family 156 530 IPR005202 -
Pvu10g1346 542 MobiDBLite consensus disorder prediction 87 102 - -
Pvu10g1346 542 ProSiteProfiles GRAS family profile. 146 530 IPR005202 -
Pvu10g1346 542 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 530 IPR005202 -
Pvu10g1346 542 PANTHER NODULATION-SIGNALING PATHWAY 1 PROTEIN-LIKE 4 530 IPR030015 -
Pvu10g1346 542 MobiDBLite consensus disorder prediction 63 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1346 Pvu-Chr10 39948943 39951082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1346 1 530 GRAS Transcription Factor Family AT3G13840 50.916 8.82e-171 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pvu10g1346 GRAS 3.4e-74 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1346 - - gmx:100806550 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1346 10 39948943 39951082 Pvu10g1346 10 39948943 39951082 ECH
Pvu10g1346 10 39948943 39951082 Pvu5g1592 5 38105503 38107051 PCT