Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1345 ATGTCCCATCAGGAGCAAGCCTTAGTGTCCCTTCTCTCCCAGCTCGCCCTTTCCTTCGACGGCGCCGTTTTGGGCTTCGCCTTGGCCTACGCCGCCATCCGCACCCTCGTCAAATTCTCCGCCACCTCCGCCGCCCTCCGCAAGCTCCGCCGCGCCCCTTATCTCTCCGTTTCCGACCTCCGATCACTCCTCGCCGATACTCCATCTGACGCCAACTCTAACTCCGACGGTGGCGCAATCGTAATTGTCCGCGGCAACGTTGATGCCAAGTCCGCAGTCGATGGCTCCTGGAAAACCCTCAGACCCGGCGTCTTGGTTTCTCGCGAGTCCGGTGATAGAGGCGTCATCCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGATTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTGTTCTAATTGATGTTGGATGGCGGCCATCTACTGAGTATGTTGTTGTCAACATGGATGGCTCAAGACATCCGTTGCCTCTGACGACAGTTTATCATAAGTTGCAACCAATAAATGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGACATGAATATCCGGTCGGACTGCTAGATGAAGAAAAAATACTTCCAGTGGGGAAGGATGTCACTGCTGTTGGTCTTGTCAGTCTAAATAATGGAGTTGCTGAAATTAAGTCATGCAAAGATCTACCATATTTTCTATCTGACTTGAGCAAAGATCAGATGATAGTGGATCTTTCCATCAAAACGAAAATTCTGTTTTGGGGTGGCATTGCTCTCGGTTCAATGTCAGTTGGGATCCTTGGCTATGCAGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCTACAGAGGCAGCTCCAGCAACAAAGGCAAGCAGTGAGTGATGTTGAACCTCAGGTGGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGTCTGATGAGGAGAAGGCGTTCTGTCTTCATCCCCTGTGGCCACCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACATGAAGTGGCACCTAAATGTCCTGTTTGTCGTCAGGAGATTCGAAATTCAGTGCGGATTTTTGAATCATGA 1164 0.4802 MSHQEQALVSLLSQLALSFDGAVLGFALAYAAIRTLVKFSATSAALRKLRRAPYLSVSDLRSLLADTPSDANSNSDGGAIVIVRGNVDAKSAVDGSWKTLRPGVLVSRESGDRGVILQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFVLIDVGWRPSTEYVVVNMDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPVGKDVTAVGLVSLNNGVAEIKSCKDLPYFLSDLSKDQMIVDLSIKTKILFWGGIALGSMSVGILGYAVVRNWNKWKQWKLQRQLQQQRQAVSDVEPQVDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEHEVAPKCPVCRQEIRNSVRIFES* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1345 387 Pfam Zinc finger, C3HC4 type (RING finger) 333 380 - -
Pvu10g1345 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 IPR044247 GO:0004842
Pvu10g1345 387 ProSiteProfiles Zinc finger RING-type profile. 335 375 IPR001841 -
Pvu10g1345 387 SUPERFAMILY RING/U-box 334 381 - -
Pvu10g1345 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 387 IPR013083 -
Pvu10g1345 387 SMART ring_2 335 374 IPR001841 -
Pvu10g1345 387 Pfam E3 Ubiquitin ligase 141 287 IPR022170 GO:0004842|GO:0006996|GO:0016567
Pvu10g1345 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1345 332 384 C3H Transcription Factor Family AT3G06140 37.736 5.62e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1345 K15688 - gmx:100811939 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1345 10 39943434 39948364 Pvu10g1345 10 39943434 39948364 ECH