Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1326 ATGTCAAGTTTCTCCAACACCGTGTCGGAAGCCCGGAGGTCCGGCAAGGCACCGGAAAAATCCTCTTTTTCTCAGACTTGCAGCCTCTTGAGCCAGTTCTTGAAGGAGAAACGAGCTTCTGGTGACTCCACCCTTGGAATGGTTGGGAAAATGGAACCTAAAGCGAGTACGAAGGATTTGTTTGGCAGCCTGCAAAACTCAGATGGGGCTTTGAAACTAAGCGCTTCTGCCATGGATTTTCTTCCCCAGCTTGTGGAAAACCCCTGCATTAAGAAGTCTAATCTTAGTAGCTCATCGGTTCCTGAATCTCCTCAAATGACAATATTCTATGCTGGAAAAATGTTGGTCTTTGATGCTTTTCCTCCTGAGAAGGCAACAGAGGTCATGGAGTTGGCCACCAAGCTGGCGTCGGACACTTCCGGCGCCGAAGAAACTCCCCCTAGTGGTCCGGTTACTACTAAAGAATTGGCTGAGGCCAAAGTGCCACAAACAAACACCTCAGAAACCCCTAAGCTAGGAAGCCAAGGAGTTGGTTCAGATATGAGATATCCAAGAAGAGCTTCACTTCTAAAATTTCTTGAGAAAAGAAAAGAAAGGGTTATTGCAAGAGGGCCTTACCAAATGAACAACCAGAAAGCAGAGGGAAGCAGTTCAGGGGGTGAACCTGAAGATCAGTGTTCTAAACAGTTTGACCTTAACTTGTAG 705 0.4681 MSSFSNTVSEARRSGKAPEKSSFSQTCSLLSQFLKEKRASGDSTLGMVGKMEPKASTKDLFGSLQNSDGALKLSASAMDFLPQLVENPCIKKSNLSSSSVPESPQMTIFYAGKMLVFDAFPPEKATEVMELATKLASDTSGAEETPPSGPVTTKELAEAKVPQTNTSETPKLGSQGVGSDMRYPRRASLLKFLEKRKERVIARGPYQMNNQKAEGSSSGGEPEDQCSKQFDLNL* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1326 234 MobiDBLite consensus disorder prediction 200 234 - -
Pvu10g1326 234 MobiDBLite consensus disorder prediction 1 25 - -
Pvu10g1326 234 MobiDBLite consensus disorder prediction 158 174 - -
Pvu10g1326 234 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 8 228 - -
Pvu10g1326 234 SMART tify_2 99 134 IPR010399 -
Pvu10g1326 234 Pfam Jas motif 185 207 IPR018467 -
Pvu10g1326 234 MobiDBLite consensus disorder prediction 136 182 - -
Pvu10g1326 234 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 8 228 IPR040390 -
Pvu10g1326 234 Pfam tify domain 101 132 IPR010399 -
Pvu10g1326 234 ProSiteProfiles Tify domain profile. 99 134 IPR010399 -
Pvu10g1326 234 MobiDBLite consensus disorder prediction 209 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1326 Pvu-Chr10 39705449 39707862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1326 8 208 Tify Gene Family AT1G19180 34.498 1.16e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pvu10g1326 tify 4.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1326 K13464 - gmx:100778559 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1326 10 39705449 39707862 Pvu10g1326 10 39705449 39707862 ECH