Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1325 ATGCAGAATCATAGGCTGAAACAACAGCAGCAACAACAACAACAACAAGCTCTGATGCAGCAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCACCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTCGGGAATATCCATACACAGGTAACTGAACCGCTTCTGCAAGAAGTTTTTGCTGGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCATCATATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATTTATTTGGCCAGCCTATCAAAGTTAATTGGGCGTATGCTAGTGGTCAGCGAGAGGACACATCAGGTCATTACAACATTTTTGTTGGTGATCTAAGTCCAGAGGTTACTGATGCTACACTGTTTGCATGCTTTTCTGTCTACTCTAGCTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGATTTGGATTTGTTTCATTTCGTAGTCAACAGGATGCACAAGGTGCTATAAATGATTTGACCGGTAAATGGCTTGGAAGTAGACAAATACGATGTAACTGGGCAACAAAAGGTGCTGGTGGTATTGAAGAGAAGCAAAACTCAGATGCAAAAAGCGTGGTGGAACTAACAAATGCTTCATCTGAAGATGGTAAAGACATATCTAACAGTGATGCTCCGGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTTCCGAGGTAACTCAACTTGATCTCCATCGACACTTCCACTCTCTTGGAGCTGGAGTGATAGAGGAGGTTCGTGTCCAGTGTGATAAAGGTTTTGGTTTTGTTAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAGTCTCTTCTTCTTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCCACATCTCTGCCTGGCCTGTCTGCAACCGATCTTATGGTGTACGAGCGACAGCTAGCAATAAGTAAGATGGGGAGCGTGCATGCCTTGATGCATCCCCAAGGGCAACATCCTCTTAAACAAGCAGCAGCCATTGGAGCCAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1272 0.4575 MQNHRLKQQQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYSSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQGAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDAKSVVELTNASSEDGKDISNSDAPENNPQYTTVYVGNLASEVTQLDLHRHFHSLGAGVIEEVRVQCDKGFGFVRYSTHAEAALAIQMGNAQSLLLGKQIKCSWGSKPTPPGTASNPLPPPAATSLPGLSATDLMVYERQLAISKMGSVHALMHPQGQHPLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1325 423 MobiDBLite consensus disorder prediction 241 262 - -
Pvu10g1325 423 SUPERFAMILY RNA-binding domain, RBD 42 136 IPR035979 GO:0003676
Pvu10g1325 423 SUPERFAMILY RNA-binding domain, RBD 253 346 IPR035979 GO:0003676
Pvu10g1325 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 215 IPR000504 GO:0003723
Pvu10g1325 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 323 IPR000504 GO:0003723
Pvu10g1325 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 126 IPR000504 GO:0003723
Pvu10g1325 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 339 IPR000504 GO:0003723
Pvu10g1325 423 Gene3D - 142 223 IPR012677 -
Pvu10g1325 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 132 IPR000504 GO:0003723
Pvu10g1325 423 Coils Coil 1 21 - -
Pvu10g1325 423 SUPERFAMILY RNA-binding domain, RBD 137 224 IPR035979 GO:0003676
Pvu10g1325 423 CDD RRM3_TIA1_like 264 339 - -
Pvu10g1325 423 CDD RRM1_TIA1_like 60 130 - -
Pvu10g1325 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Pvu10g1325 423 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 8 421 - -
Pvu10g1325 423 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 421 - -
Pvu10g1325 423 Gene3D - 241 343 IPR012677 -
Pvu10g1325 423 SMART rrm1_1 144 217 IPR000504 GO:0003723
Pvu10g1325 423 SMART rrm1_1 265 335 IPR000504 GO:0003723
Pvu10g1325 423 SMART rrm1_1 59 128 IPR000504 GO:0003723
Pvu10g1325 423 Gene3D - 1 141 IPR012677 -
Pvu10g1325 423 CDD RRM2_PUB1 144 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1325 Pvu-Chr10 39691467 39698739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1325 53 340 Eukaryotic Initiation Factors Gene Family AT4G34110 27.723 3.87e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1325 K13201 - gmx:100781227 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1325 10 39691467 39698739 Pvu10g1325 10 39691467 39698739 ECH