Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1316 ATGGACGACGACGAAGAGATCCAGTCGCATCCGTCGCCGGCGAGCGGATCCCCGTTGTCGTCTCCGCGGGCCAACGGACGGATAACGGTGACGGTCGCGGCGCCGGCGCCGTCGAATAGTTTGGCATTAGCGCTTCCGATTCAGCAGCCGGCGAAGGGGAACGGTGGGGGAGGAGGCGGCGGCGGTGGAGGGAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTACTGATCGACGCGTGGGGAGAGAGGTATCTGGAACTGAGCAGAGGAAATCTGAAACAGAAGCACTGGAAGGAGGTGGCGGATATTGTGAGCGGCAGAGAGGATTACACGAAGGCGCCGAAGACCGATATTCAGTGCAAAAACCGGATCGACACCGTAAAGAAGAAGTACAAATCGGAGAAGGCGAAGATCGCCGCCGGCGCCACCAGCAAGTGGCCGTTCTTCGACCGATTGGACAAATTGATAGGCCCAAGCGCCAAGATCCCCGGCGCCGGCGGCTCCTCCGGGACAGCCGGCACCAGCGCTGCCGGAAACAGTATTTTACAGCCGCAGAAAGTGCCTTTGGGGATTCCGGTCGGCATTCGCGACGGCGTGAATCAGTATCACCGTCCTCAAAGGCCGGCGCAGCAGCAACAACAGCAGCCGGTTCCGTTGAAGAACCAGAAGATTCAGTTCCGGCGCCGCGATCCACCGTTGGAATCCGATTCGGACGAGCGTGGCGCCTCGTCGCCAGCCTCAAGCGACAGTTTTCCGCCGGAGAGTTTCGAGCGGAAGAGGCCGCGGGTGATGAGTTCGAACGCGGGGAAAGGAAGCGAAGGTAGACGGAAGGCGAAAGGCTGGGGAAGCGCGGTGAGGGAACTGACGCAGGCGATTCTGAAATTTGGCGAGGCGTATGAACATGCGGAGAGCTCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTCGCGAAGGATTTGGAGTTGCAGAGGATGCAGTTTTTCATGAAGACACAATTGGAGATTTCGCAACTCAAGCTTGGAAGAAAAGGTGCTAATCCTAGCAACAATCACCATAGCACCAACATCAATAACAATAACAACAATCATAACAATAATAGTGACAGCGAGTGA 1128 0.5771 MDDDEEIQSHPSPASGSPLSSPRANGRITVTVAAPAPSNSLALALPIQQPAKGNGGGGGGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVSGREDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGATSKWPFFDRLDKLIGPSAKIPGAGGSSGTAGTSAAGNSILQPQKVPLGIPVGIRDGVNQYHRPQRPAQQQQQQPVPLKNQKIQFRRRDPPLESDSDERGASSPASSDSFPPESFERKRPRVMSSNAGKGSEGRRKAKGWGSAVRELTQAILKFGEAYEHAESSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQLEISQLKLGRKGANPSNNHHSTNINNNNNNHNNNSDSE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1316 375 MobiDBLite consensus disorder prediction 169 183 - -
Pvu10g1316 375 Gene3D - 69 134 - -
Pvu10g1316 375 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 2 344 IPR044823 -
Pvu10g1316 375 MobiDBLite consensus disorder prediction 10 28 - -
Pvu10g1316 375 MobiDBLite consensus disorder prediction 345 375 - -
Pvu10g1316 375 MobiDBLite consensus disorder prediction 158 284 - -
Pvu10g1316 375 MobiDBLite consensus disorder prediction 1 28 - -
Pvu10g1316 375 Pfam Myb/SANT-like DNA-binding domain 66 156 IPR044822 -
Pvu10g1316 375 MobiDBLite consensus disorder prediction 347 375 - -
Pvu10g1316 375 MobiDBLite consensus disorder prediction 224 238 - -
Pvu10g1316 375 MobiDBLite consensus disorder prediction 205 222 - -
Pvu10g1316 375 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 2 344 - -
Pvu10g1316 375 MobiDBLite consensus disorder prediction 44 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1316 Pvu-Chr10 39626988 39629334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1316 1 359 Trihelix Transcription Factor Family AT3G14180 48.853 6.30e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pvu10g1316 Myb_DNA-bind_4 7.4e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1316 - - gmx:100812599 528.865