Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1314 ATGGCTGATTCTTTTTCCTTTGAGGGTGACTCCTTCTCAAGCCACCAGAGACGACACCATCCAACACCAGTGAGTTATCACAGCGTGTCTGGCTCTGGCTCTTTCATACCATCCAGCTTTCATACCGATGCCACTTCCACAACCAGAACAGCTCGCCACAACCGAGTTCCTGCCACACCCTTCGCTTCAGATGATGACCATTCATGGCAAGAAGAGGTTTCATGGAAGTTTGAGGCCACCGGGTGGCACCATTATAGCACAAACTTTGGTTCTCTTCTGACTCCATGGCCAGCTAGCTCCCCTTCTGATCACAGCCGTATATTTCGACAATCAGCCAATGACTTCTACCTTTCAAGAACAAGTAGGTTCAGAGGTCTCCCAAGCTCTTCTTATGAACATTCTAGCCATGGTAGAGTTGAACTAAAGAGCTATGTTGCTAGGGACAATGATCATAGTTACTTTGATCAGCGTAGTGAGCCTCATGGATTATCCAAATCGGGGCAGAGTAGTAGAAAAGGTAAGAGCAGTCCATTGGCAGGGGAAGATGAGCTTAGTATGATAAATTATAGCATAACAGAAGAGCATCTAAATTCACCCAATGGGAATGGTCATGGTCTTGAATCCCCATATTTTAAAAATGGTCATGGGCTACCTTCACATGATGGTAGCCATCTTTATGGAAGTGGTGGGGGTTATAGTTATCCTCACCATAACATTGAGAAGTATTCAGGATATGATGAAGAAGGAGAGGAGAATATGGATGAGGAAGATGCAAGTCCTCCAAAGGCTGTTGGGCTATTCAGCTTGTTTAGATACTCAACAAAGTGGGATTGGATGCTTGTGTTTGTGGGGTGTTTAGGGGCCCTCATAAATGGAGGATCACTTCCATGGTACTCATATCTTTTTGGAGACTTGGTCAACAAGATTTCAGAAGCAGACAAGGACAAAAAACAGATGATGAAGGATGTAGAGAAGATATGCCTATTTATGACGGGGCTAGCTGCTGTTGTGGTGGTTGGAGCATATCTGCAGATCACATGTTGGAGGTTAGTGGGGGCAAGATCTGCACAAAGAATTAGAACTCAGTATCTAAGAGCAGTTCTTAGACAAGACATCACTTTCTTTGACACAGATATCAGCACAGGTGATATTATGCATGGAATTGCAAGCGATGTTGCACAGATTCAGGAAGTTATGGGAGAGAAGATGGCCCACTTCATTCATCACATATTTACATTCATATGTGGATACGCAGTTGGGTTTAAAAGATCATGGAAAGTCTCTCTTGTGGTATTCTCAGTCACTCCATTGACAATGTTCTGTGGCATGGCTTACAAAGCACTTTATGGTGGCCTAACAGCAAAAGAGGAAGCTTCTTATAGGAAAGCTGGTAGCATTGCGGAGCAGGCCATACGTTCAATAAGGACAGTGTTTTCATTTGTTGCAGAAAACCAATTAGCTGGAAAATATGATGAACTACTGCAGCAATCAGCTCCATTAGGGGCAAAAGTTGGTTTTGCTAAAGGTATTGGCATGGGTGTGATCTACTTGATAACCTATTCAACATGGGCACTGGCATTCTGGTATGGCTCAGTATTAATTGCCAAGAATGAACTTGATGGAGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGGGGAAGAGGATTGGCACTGGCACTTTCATATTTTGCACAGTTTGCACAAGGGACTGTTGCAGCAAGCCGTGTATTCTATGTTATTGAGAGAATCCCTGAGATTGATCCCTACAGCCCTGAGGGTAGGAAGCTTTCTGGTGTTCGTGGAAGGATTGAGTTAAAAAGTGTTAGTTTTGCATATCCATCACGTCCTGATTCTCTGATACTTCATTCCCTTAATTTGATATTACCATCTTCAAAAACTGTGGCATTAGTTGGTGCCAGTGGTGGGGGAAAGTCCACTATCTTTGCTCTCATAGAGAGGTTTTATGACCCTACTGAAGGGATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAGTGGCTACGTGAACAGATTGGGATGGTTGGTCAAGAGCCAATCCTCTTTGCCACATCTATACTGGAAAACGTGATGATGGGGAGAGATAATGCCACAAAGGAAGAGGCAATTGCTGCTTGTATTGCTGCTGATGCTCATAGCTTCATCTCTAGCCTACCACTAAGCTATGACACTCAGGCGGGAGATAGGGGTACAAAGCTCTCCGGAGGTCAAAAGCAGAGAATTGCACTGGCTCGAGCAATGATCAAAGATCCTAAAATCCTTCTTCTAGATGAACCTACTAGTGCTCTTGATGCCGAGTCAGAGTCTGCGGTCCAACGGGCAATTGACAAGATTTCTGCTGGCCGAACAACCATTGTGATTGCTCACAGAATAGCAACAGTGAAGAATGCTCATACCATTGTGGTTCTTGAACATGGTTCTGTCACTGAGATTGGTGACCATCGACAGCTGTTATCAAAAGCAGGAGCATACCACAACCTTGTCAAGCTTGCTACAGAAGCCATTTCAAAACCTCTAGCTATAGAGAATGGCATACAAAAAGGCAATGATTTATCCATCTATGATAAATCTGCTGCTGCTTTATCGGGATCAAGATATCTAGTTGATATCCCTGGGCCTAAAGACTTAATATCTATGCATGAGGAGGAGAAACAGGAAGACATGGAAGTTCATGACAAAATAAAGGCAAAAAGTTACAGACTTTCTGAAGTATGGAAACTGCAAAGGCCTGAGCTTGTGATGCTATTTTCAGGACTTATTCTGGGAATGTTTGCTGGTGCTATTCTGTCCCTTTTCCCATTGATTTTAGGCATATCCTTGGAAGTATATTTTGGCGATGACACTTCTAAGATGAAAAGAGATGTTTCCCACCTTTGTTTAACACTTGTTGGCCTTGGATTTGGTTGCATACTTTCCATGACAGGACAACAAGGTTTCTGTGGTTGGGCTGGATCAAAGCTGACACAAAGAGTTAGAGACATCTTGTTTCAATCCATACTGAGACAAGAACCTGGGTGGTTTGACTTTGAAGAAAACTCTACGGGAGT 3080 0.4328 MADSFSFEGDSFSSHQRRHHPTPVSYHSVSGSGSFIPSSFHTDATSTTRTARHNRVPATPFASDDDHSWQEEVSWKFEATGWHHYSTNFGSLLTPWPASSPSDHSRIFRQSANDFYLSRTSRFRGLPSSSYEHSSHGRVELKSYVARDNDHSYFDQRSEPHGLSKSGQSSRKGKSSPLAGEDELSMINYSITEEHLNSPNGNGHGLESPYFKNGHGLPSHDGSHLYGSGGGYSYPHHNIEKYSGYDEEGEENMDEEDASPPKAVGLFSLFRYSTKWDWMLVFVGCLGALINGGSLPWYSYLFGDLVNKISEADKDKKQMMKDVEKICLFMTGLAAVVVVGAYLQITCWRLVGARSAQRIRTQYLRAVLRQDITFFDTDISTGDIMHGIASDVAQIQEVMGEKMAHFIHHIFTFICGYAVGFKRSWKVSLVVFSVTPLTMFCGMAYKALYGGLTAKEEASYRKAGSIAEQAIRSIRTVFSFVAENQLAGKYDELLQQSAPLGAKVGFAKGIGMGVIYLITYSTWALAFWYGSVLIAKNELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFYVIERIPEIDPYSPEGRKLSGVRGRIELKSVSFAYPSRPDSLILHSLNLILPSSKTVALVGASGGGKSTIFALIERFYDPTEGIITLDGHDLRTLQVKWLREQIGMVGQEPILFATSILENVMMGRDNATKEEAIAACIAADAHSFISSLPLSYDTQAGDRGTKLSGGQKQRIALARAMIKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNAHTIVVLEHGSVTEIGDHRQLLSKAGAYHNLVKLATEAISKPLAIENGIQKGNDLSIYDKSAAALSGSRYLVDIPGPKDLISMHEEEKQEDMEVHDKIKAKSYRLSEVWKLQRPELVMLFSGLILGMFAGAILSLFPLILGISLEVYFGDDTSKMKRDVSHLCLTLVGLGFGCILSMTGQQGFCGWAGSKLTQRVRDILFQSILRQEPGWFDFEENSTG 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1314 1026 SUPERFAMILY ABC transporter transmembrane region 914 1026 IPR036640 GO:0005524|GO:0016021
Pvu10g1314 1026 SMART AAA_5 632 833 IPR003593 -
Pvu10g1314 1026 CDD ABC_6TM_Pgp_ABCB1_D1_like 282 578 - -
Pvu10g1314 1026 MobiDBLite consensus disorder prediction 194 213 - -
Pvu10g1314 1026 Pfam ABC transporter 623 772 IPR003439 GO:0005524
Pvu10g1314 1026 MobiDBLite consensus disorder prediction 23 54 - -
Pvu10g1314 1026 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 605 841 IPR003439 GO:0005524
Pvu10g1314 1026 MobiDBLite consensus disorder prediction 159 175 - -
Pvu10g1314 1026 Gene3D ABC transporter type 1, transmembrane domain 890 1026 IPR036640 GO:0005524|GO:0016021
Pvu10g1314 1026 Gene3D ABC transporter type 1, transmembrane domain 268 846 IPR036640 GO:0005524|GO:0016021
Pvu10g1314 1026 PANTHER - 236 1026 - -
Pvu10g1314 1026 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 929 1026 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1314 1026 MobiDBLite consensus disorder prediction 152 179 - -
Pvu10g1314 1026 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 282 570 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1314 1026 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524
Pvu10g1314 1026 MobiDBLite consensus disorder prediction 1 63 - -
Pvu10g1314 1026 SUPERFAMILY ABC transporter transmembrane region 268 590 IPR036640 GO:0005524|GO:0016021
Pvu10g1314 1026 Gene3D - 595 843 IPR027417 -
Pvu10g1314 1026 PANTHER ABC TRANSPORTER B FAMILY 236 1026 - -
Pvu10g1314 1026 CDD ABC_MTABC3_MDL1_MDL2 605 842 - -
Pvu10g1314 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 841 IPR027417 -
Pvu10g1314 1026 Pfam ABC transporter transmembrane region 281 552 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1314 1026 Pfam ABC transporter transmembrane region 928 1026 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1314 Pvu-Chr10 39604295 39611322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1314 277 841 Calmodulin-binding Proteins AT2G36910 36.204 9.84e-111 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1314 K05658 - gmx:100816700 1691.01