Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1313 GTCCACATAAGGACAGTTACCACATTTTCTGCCCAGGAACAGATAGTTAAGTCCTTTGATAGAGCCCTATCAGAACCTAGAAAAAAATCATTACGAAGTTCACAACTTCAAGGTTTTGTGTTTGGGTTGTTTCAAGGTTCCATGTATGGAGCATACACCTTAACACTTTGGTTTGGCTCATACCTTGTAGAACATGACAAGGCAAAACTTGGAGACGTGTTTAAGATCTTTCTCATTCTTGTTCTGAGCTCATTTTCTGTGGGACAACTAGCTGGTTTGGCACCAGATACTTCTATGGCGGCTACAGCAATTCCTGCAGTTCAAGATATCATAAAACGCAGGCCTCTGATTAACAATGATAGAACAAAAGTAAGGAAAGTAGACAAATCAAAGCCATTCAACATAGAATTCAAGATGGTGACATTTGCATACCCATCTAGGCCAGAAGTGACTGTGTTGAGGGACTTTTGTTTAAAGGTCAAAGGTGGAAGCACAGTGGCCCTGGTGGGACCAAGTGGATCAGGGAAGTCAACGGTAATATGGTTGACTCAGAGGTTCTATGATCCTGACCAAGGAAAGGTGATGCTGAGTGGGGTAGATTTGAGGGAGATTGATGTGAAGTGGTTGAGGAGGCAAATGGCTTTGGTGGGTCAAGAACCTACACTTTTTGCTGGGAGCATAAGGGAGAATATTGCATTTGGGGACCCAAATGCTTCATGGACTGAAATTGAAGAGGCTGCAAAGGAGGCTTACATCCACAAGTTCATCAGTGGCCTACCTCAGGGTTATGAGACACAGGTTGGTGAAAGTGGGGTCCAGTTATCAGGTGGCCAGAAACAACGAATTGCTATAGCAAGGGCCATATTGAAGAGATCGAGGGTACTTTTGCTTGATGAGGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAACACGTCCAAGAAGCCCTTAAAAATGTTGGCAAAGAGGCAACAACCATAATAGTTGCTCACCGTCTTTCCACAATCAGAGAAGCTGGTAAGATCGCAGTTATGAGAGACGGGGAAGTGGTGGAGTATGGGAGCCATGACACTCTCATGGCTTCAACTCAAAATGGCTTGTATGCTAGCCTAGTTCGAGCTGAGACTGAAGCCAATGCCTTTTCTTGA 1146 0.445 VHIRTVTTFSAQEQIVKSFDRALSEPRKKSLRSSQLQGFVFGLFQGSMYGAYTLTLWFGSYLVEHDKAKLGDVFKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVQDIIKRRPLINNDRTKVRKVDKSKPFNIEFKMVTFAYPSRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVMLSGVDLREIDVKWLRRQMALVGQEPTLFAGSIRENIAFGDPNASWTEIEEAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKRSRVLLLDEASSALDLESEKHVQEALKNVGKEATTIIVAHRLSTIREAGKIAVMRDGEVVEYGSHDTLMASTQNGLYASLVRAETEANAFS* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1313 381 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 99 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1313 381 CDD ABC_MTABC3_MDL1_MDL2 135 373 - -
Pvu10g1313 381 SMART AAA_5 162 348 IPR003593 -
Pvu10g1313 381 Pfam ABC transporter 154 301 IPR003439 GO:0005524
Pvu10g1313 381 Gene3D ABC transporter type 1, transmembrane domain 2 131 IPR036640 GO:0005524|GO:0016021
Pvu10g1313 381 Pfam ABC transporter transmembrane region 3 83 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu10g1313 381 PANTHER ABC TRANSPORTER B FAMILY 2 380 - -
Pvu10g1313 381 Gene3D - 133 375 IPR027417 -
Pvu10g1313 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 372 IPR027417 -
Pvu10g1313 381 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 135 371 IPR003439 GO:0005524
Pvu10g1313 381 ProSitePatterns ABC transporters family signature. 274 288 IPR017871 GO:0005524
Pvu10g1313 381 SUPERFAMILY ABC transporter transmembrane region 3 115 IPR036640 GO:0005524|GO:0016021
Pvu10g1313 381 PANTHER - 2 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1313 Pvu-Chr10 39602702 39604042 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1313 1 378 Calmodulin-binding Proteins AT2G36910 45.767 1.12e-102 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1313 K05658 - pvu:PHAVU_010G1262001 733.406