Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1302 ATGGCCGCCCCTACCAACGCCGCTGCTGCCCCGCCGCGTCAGCTATCCCAGAAGGAAGCCGACATCCAGATGATGTTGGCCGCCGACGTTCACCTCGGCACCAAGAACTGCGACTTCCAAATGGAACGTTACATCTTCAAGCGCCGCAACGACGGTATTTACATTATCAACCTTGGAAAGACCTGGGAGAAGCTTCAGCTTGCTGCCAGGGTTATTGTTGCAATTGAGAACCCTCAGGATATTATTGTTCAATCTGCAAGGCCTTATGGTCAGAGAGCGGTTCTCAAGTTTGCTCAATACACCGGTGCTCATGCCATTGCTGGAAGGCATACTCCTGGTACCTTTACCAATCAGCTCCAAACCTCATTCAGTGAGCCTCGCCTCCTTATCCTCACGGATCCAAGAACAGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACTGACTCACCTATGAGGTATGTAGACATTGGAATTCCTGCCAACAACAAGGGCAAACACAGCATTGGTTGTCTCTTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGGTCGACTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCTGCTGGTGATTATGCCATTACTGACTACAATCCTGGTGCTATTGCTGCTGATGGCCAGTGGCCGGGAACAATTGATCAATCTTGGACAGATGCAGTTCCACAACCCATTCCAGCTGTACCTGGTGTCAACTGGGGAGCACCACCAACTTCAGAAGCACCTGGAGATTGGGGTGAGGCTGTTCCACCTCCACAACAAATCCCTCTTCCTCCTACTGGAGTTGAATCTGTCCAACCAACTGGCTGGGAGTAA 927 0.5059 MAAPTNAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDYNPGAIAADGQWPGTIDQSWTDAVPQPIPAVPGVNWGAPPTSEAPGDWGEAVPPPQQIPLPPTGVESVQPTGWE* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1302 308 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Pvu10g1302 308 Hamap 40S ribosomal protein SA [rps-0]. 9 257 IPR027498 GO:0003735|GO:0006412|GO:0015935
Pvu10g1302 308 Pfam Ribosomal protein S2 25 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pvu10g1302 308 Pfam Ribosomal protein S2 124 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pvu10g1302 308 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pvu10g1302 308 Gene3D - 21 227 - -
Pvu10g1302 308 MobiDBLite consensus disorder prediction 256 308 - -
Pvu10g1302 308 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pvu10g1302 308 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pvu10g1302 308 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pvu10g1302 308 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pvu10g1302 308 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pvu10g1302 308 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pvu10g1302 308 PANTHER 40S RIBOSOMAL PROTEIN SA 14 293 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pvu10g1302 308 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pvu10g1302 308 PANTHER 40S RIBOSOMAL PROTEIN SA 14 293 - -
Pvu10g1302 308 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1302 Pvu-Chr10 39523517 39525617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1302 6 268 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 78.195 5.25e-152 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1302 K02998 - gmx:100805318 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1302 10 39523517 39525617 Pvu10g1302 10 39523517 39525617 ECH