Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1298 ATGTGTGGGGGTGCGATTATCTCCGACTTCATTCCGGCGGGGCCGGCCGGCCGGTCCCGACGCGTCACCGCCGACATCCTGTGGCCGAATTTGAGGAAGCGGTTCTCGAAGCCGCTGCTGGACGATGATTTTGAGGCGGGGTTCAGAGAATTCAAGGATGACTCTGAAATCGAGGATGATGATGATGAGGACGAGGAGGACTTGATGGTGATTGGTGTGAAGAAGCCCTTTGGCTTTACACGCCCCAACAAGACTTCTAAGTCTCTCTCTCGTGCATCATCAACTGTAAATTCTGTGGAATCAAAGGGGCAAGCTGAGGAGAGTGCCAAGAGAAAGAGGAAGAACCAATATAGAGGAATTCGCCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCAAGAAAAGGGGTCCGGGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATACTGAGGCAAGGAGGATTCGTGGGAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGCTGCTTCTTCAAAACGCCTCAAGGTGAATCCAGAGGCTCAGCCATTGAAGGGAAAACTCAACTCGGTGAAGCCGAAAATGAACCAGATGTTCAACTTTGGTGACTATCTGGAGGACTACTACAGCTCTGTGGATCAGGTTGAACAGAAGCCACTGGTAAACCAGTATGTGAACCCTGGTCCATTCACTGGAAACGGAGTTCAGCTCTCACCTGTTACTCCATCTGCTGATGTTATTGCTTATTTCAGTTCCGAGCATTCGAGCAACTCATTTGATTATTCTGACCTTGGATGGGGTGAACAAGTCTCAAAGACTCCTGAAATCTCATCCATGCTTTCTGCTCCTCTGGAGGGTGAATCTCAGTTTGTGCAGGGTGCTGATCAGATTCAGAGGAACGACACTCAGGACATGCTATCTGTCCAAGATGATTCTGCAAAGACACTTTCTGAGGAGCTTGCAGACATCGAATCCCAGTTGAAGTTCTTTGAGACCCCTTTGTTTGATGGAAGCTGGACTGAAGCTTCATTGGCATCTCTGCTCGGCACTGATGCAACTCAGGATGCTGGAAACCCTTTGAACCTTTGGAGCTTCGACGACCTGCCATCAATGGCAGGTGTTTTCTGA 1155 0.497 MCGGAIISDFIPAGPAGRSRRVTADILWPNLRKRFSKPLLDDDFEAGFREFKDDSEIEDDDDEDEEDLMVIGVKKPFGFTRPNKTSKSLSRASSTVNSVESKGQAEESAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDTEARRIRGKKAKVNFPDEPSAASSKRLKVNPEAQPLKGKLNSVKPKMNQMFNFGDYLEDYYSSVDQVEQKPLVNQYVNPGPFTGNGVQLSPVTPSADVIAYFSSEHSSNSFDYSDLGWGEQVSKTPEISSMLSAPLEGESQFVQGADQIQRNDTQDMLSVQDDSAKTLSEELADIESQLKFFETPLFDGSWTEASLASLLGTDATQDAGNPLNLWSFDDLPSMAGVF* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1298 384 CDD AP2 116 174 IPR001471 GO:0003700|GO:0006355
Pvu10g1298 384 MobiDBLite consensus disorder prediction 82 103 - -
Pvu10g1298 384 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677
Pvu10g1298 384 PANTHER DNA-BINDING DOMAIN 1 379 IPR044808 GO:0003700|GO:0009873
Pvu10g1298 384 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Pvu10g1298 384 MobiDBLite consensus disorder prediction 82 120 - -
Pvu10g1298 384 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Pvu10g1298 384 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Pvu10g1298 384 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700|GO:0006355
Pvu10g1298 384 PANTHER EREBP TRANSCRIPTION FACTOR 1 379 - -
Pvu10g1298 384 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Pvu10g1298 384 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1298 Pvu-Chr10 39467544 39470639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1298 1 380 AP2-EREBP Transcription Factor Family AT3G14230 42.998 1.48e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu10g1298 AP2 1.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1298 K09286 - gmx:100818646 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1298 10 39467544 39470639 Pvu10g1298 10 39467544 39470639 ECH
Pvu9g2707 9 37365318 37367770 Pvu10g1298 10 39467544 39470639 PCT