Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1296 GAGAGTGATAGTGAAGATGCACCTCTGAGAATTCTCAAGGGAAAACAGATAAAGACAGAAGAATCTTCCAATGTCTACTGTGCTATTTGCATGGATGAACAACCTGATGAAAAAATGTTCAAGAATCAACACTGTTCTCACATCTTTTGTAATGACTGCATCAGAAGACATGTTGCTGCAAAGATTGAAGAGAATAGATCAGTAGTAGAATGCCCACATCCGAGTTGCAAGCAGGTTCTAGAGCCTCATCAGTGTCGTTCAATTATACCAGAAGAACTGTTTGATAAATGGGGAAATGTTCTTTGTCAAAATTTGGTGCCTGAATCAGAGAAGTTTTACTGTCCTTTTAAGGATTGTTCTGCTATGATGATATGTGACTGCAATGAAGTTGTGAGTTCATGTGAGTGTCCACATTGCAATAGAATATTTTGTGCACAGTGCAAGGTTTCGTGGCATGCAGAAATAGGTTGTGAGGAGTTTCAGAAGTTGGAGGAGGCTAAGGTAGAGAAGGGAGACTCATTGGTGATGGAACTTGCAAAGAGTAAAAGTTGGAGGAGATGCCCAAAATGCAGTTTTTACGTAGAAAGAATTGAAGGGTGCTGTCGTATTGTTTGCAGATGTGGCCATAAATTTTGCTATGATTGTGGATTGTCTTGGAAGAGTAATTGA 669 0.3961 ESDSEDAPLRILKGKQIKTEESSNVYCAICMDEQPDEKMFKNQHCSHIFCNDCIRRHVAAKIEENRSVVECPHPSCKQVLEPHQCRSIIPEELFDKWGNVLCQNLVPESEKFYCPFKDCSAMMICDCNEVVSSCECPHCNRIFCAQCKVSWHAEIGCEEFQKLEEAKVEKGDSLVMELAKSKSWRRCPKCSFYVERIEGCCRIVCRCGHKFCYDCGLSWKSN* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1296 222 SUPERFAMILY RING/U-box 105 162 - -
Pvu10g1296 222 SMART ibrneu5 169 222 IPR002867 -
Pvu10g1296 222 SMART ibrneu5 95 157 IPR002867 -
Pvu10g1296 222 ProSiteProfiles TRIAD supradomain profile. 23 222 IPR044066 -
Pvu10g1296 222 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Pvu10g1296 222 Pfam IBR domain, a half RING-finger domain 177 221 IPR002867 -
Pvu10g1296 222 Pfam Zinc finger, C3HC4 type (RING finger) 27 72 IPR018957 GO:0046872
Pvu10g1296 222 Gene3D - 155 222 - -
Pvu10g1296 222 ProSiteProfiles Zinc finger RING-type profile. 27 72 IPR001841 -
Pvu10g1296 222 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 218 IPR031127 GO:0004842|GO:0016567
Pvu10g1296 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Pvu10g1296 222 SUPERFAMILY RING/U-box 22 107 - -
Pvu10g1296 222 SUPERFAMILY RING/U-box 173 220 - -
Pvu10g1296 222 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1296 Pvu-Chr10 39443081 39444543 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1296 27 216 C3H Transcription Factor Family AT2G19610 28.856 1.21e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1296 K11975 - gmx:100815626 328.561