Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1294 ATGGCTCCTTCTTCTAAAGCAAACAATGGAACAACACCAAACTCGAGAAAGGGAAAGATTGAAATGAAAGAAGATGAACAGAGAAAGAGGCGATGCGTCACCTTTTCCAAACGCAAGTTGGGGCTTTTCAACAAACTCACAGAACTTTCTCTTCTATGCAAAGCGGAACTCGCTTTGATCATCACCTCCCAAAACGGCAAAGTCTATTCCTGTGGCTACCCCAACACCGACGCCGTCCTCCACCGCTACATCACCGGAGGGCCGTCTCAGCATTGCAGCGGCACAAGCGAGAAGGAGAAGGAGAAGGAGAAGTTTCTTGAAAAGCAGCGGCTGGAATACGAGAGTGTGCAGGATAAGTTGAAGGAAAAACAGAAACAGTTGAAAGAGATGAAAGGGGCAGAAAAGAACAGTTCTTGCTTTCCTCCTTGGTGGAATCTCTCCACTGAGGATATGGGTTTGGAGGATCTTGAACAGTTCAAGACCTCTTTGGAAAATTTGAAGGTTAACCTCATCACAACGTTGCAAGAGAAGAAGTTGCAGAACCTGCATTAA 552 0.4601 MAPSSKANNGTTPNSRKGKIEMKEDEQRKRRCVTFSKRKLGLFNKLTELSLLCKAELALIITSQNGKVYSCGYPNTDAVLHRYITGGPSQHCSGTSEKEKEKEKFLEKQRLEYESVQDKLKEKQKQLKEMKGAEKNSSCFPPWWNLSTEDMGLEDLEQFKTSLENLKVNLITTLQEKKLQNLH* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1294 183 PANTHER MADS BOX PROTEIN 8 180 - -
Pvu10g1294 183 SUPERFAMILY SRF-like 16 91 IPR036879 GO:0003677|GO:0046983
Pvu10g1294 183 Coils Coil 106 136 - -
Pvu10g1294 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 70 IPR002100 GO:0003677|GO:0046983
Pvu10g1294 183 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Pvu10g1294 183 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Pvu10g1294 183 MobiDBLite consensus disorder prediction 1 26 - -
Pvu10g1294 183 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 8 180 - -
Pvu10g1294 183 MobiDBLite consensus disorder prediction 1 16 - -
Pvu10g1294 183 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Pvu10g1294 183 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Pvu10g1294 183 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Pvu10g1294 183 Gene3D - 27 113 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1294 Pvu-Chr10 39430652 39431203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1294 19 167 Type I MADS-box Gene Family AT5G60440 35.526 7.62e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu10g1294 SRF-TF 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1294 - - gsj:114418701 214.927