Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1293 ATGAATTTTCTCTCAACTGTTGACGAAGTTGACGAATTCTACTTTTCAGAAGACGATGGTGAAGAAATGTTGCCAATGTCAGATGAGAGATATGCTGAACAGCTGCAACTACAAGAAGCTCTCCATTCCTCCACAACGTCGAGTGCTAGGGTTGTAAAGGAAGTTCTTCATGTGGATCTTGAGGCCAAGGGTAAACAGAAAGAGACAGGAGAAACTTCCCACACCCTTACCTACTGTGGTATTTGCATGGATGCCAAGAGAGGAGAAGAAATGTTCAGGAACCAAAACTGTTCTCACCTCTATTGTGAGGATTGCAGTGGGAAGCATGTTGCTGCAAAGGTTCAGGAAAATGTATTAACAGTGAAATGTCCTGAACCAAAATGCAAAGGGGTTATAGAGTCTCAGAACTGTCGTTCAATTATCCCTAAAGAAGTGTTGGATAGATGGGAAGATGCTCTTTGTGAGAATGTGGTGAATGCATCACAGAAGTTTTACTGTCCTTTTAAGGATTGTTCAGCTATGATGATATGTGATTCAGGTGATTCAGAGAAAGCTGTGACTACATCCGAGTGTCCACATTGCAATAGACTCTTTTGTGCACAGTGCAAGGTTCCGTGGCACTCAGGAGCTAATTGTAAAGAGTTTCAGATTCATTTGGATGGAGAGAGGGAAGATCAAAGGGTGATGGAACTTGCAAAGTCTAAAAGATGGAAAAGATGTCCGAAATGCAATTTCTACGTAGAAAAAATTAATGGATGTACACATATTTCATGCAGATGTGGCAATGAATTTTGCTATGCTTGTGGAATGGCTTGGAGTAATAAACATTATTTATGTACATCTTTAAGAGTATTGGAAGAGGAAAGGTAG 870 0.4046 MNFLSTVDEVDEFYFSEDDGEEMLPMSDERYAEQLQLQEALHSSTTSSARVVKEVLHVDLEAKGKQKETGETSHTLTYCGICMDAKRGEEMFRNQNCSHLYCEDCSGKHVAAKVQENVLTVKCPEPKCKGVIESQNCRSIIPKEVLDRWEDALCENVVNASQKFYCPFKDCSAMMICDSGDSEKAVTTSECPHCNRLFCAQCKVPWHSGANCKEFQIHLDGEREDQRVMELAKSKRWKRCPKCNFYVEKINGCTHISCRCGNEFCYACGMAWSNKHYLCTSLRVLEEER* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1293 289 Pfam IBR domain, a half RING-finger domain 231 276 IPR002867 -
Pvu10g1293 289 Pfam IBR domain, a half RING-finger domain 148 212 IPR002867 -
Pvu10g1293 289 SMART ibrneu5 147 212 IPR002867 -
Pvu10g1293 289 SMART ibrneu5 222 279 IPR002867 -
Pvu10g1293 289 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 11 280 - -
Pvu10g1293 289 SUPERFAMILY RING/U-box 75 159 - -
Pvu10g1293 289 SUPERFAMILY RING/U-box 225 280 - -
Pvu10g1293 289 ProSiteProfiles TRIAD supradomain profile. 75 285 IPR044066 -
Pvu10g1293 289 ProSiteProfiles Zinc finger RING-type profile. 79 127 IPR001841 -
Pvu10g1293 289 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 11 280 IPR031127 GO:0004842|GO:0016567
Pvu10g1293 289 SUPERFAMILY RING/U-box 153 216 - -
Pvu10g1293 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 162 IPR013083 -
Pvu10g1293 289 Gene3D - 209 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1293 Pvu-Chr10 39416024 39417515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1293 30 269 C3H Transcription Factor Family AT2G19610 25.692 1.63e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1293 K11975 - gmx:100815626 384.03