Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1292 ATGGAGGGAACTTCATCTGCATCTTCTTCTAAGAATTTTCCCTCTACTGCACAAGATCATCATTTTGTTGACGATTTCTACTTTTCAGCACTTCTTGATGCTGAAGAAATATTTCCAATTTCAGATGAGAAATATGCTGAAGAGCTACAACTGCAAGAAGCCCTATATTCCTCCACCACGTCTAGGGTTGTAAAGGAAGTTATTCAGATGGATGTGGATGTGGATGTGGATGTGGATGTGGATGTAGATGTAGATGAAGAAGATGAGGGTGACCTAGTTTTGAGAACCCTAAAGGGGAAACAGAAAGAGACCGGTGAAACTTCTCATACATGTACCTACTGTGAAATTTGCATGGATGCCAAGAGTGGAGAAGAAATGTTCAGGAACCAAAACTGTTCTCACCTTTATTGTGATGATTGCATTGGAAGACATGTTGCTGCAAAGATTCAGGAAAGTATACTGATGGTGAAATGTCCTGAACCAAAATGCAGAGAGTTTATAGAGCCTCACCACTGTCGTTCCATTATCCCTAAAGAAGTGTTTGATAGATGGGAAGATGCTCTTTGTGAAATTGTGGTGCTTGGATCAGAAAAATTTTATTGTCCTTTTGAGGATTGTTCAGCAATGATGATATGTGATGCAGATCAAGATATAACTGTTTCTGAGTGTCCACATTGCAACAGACTGTTTTGTGCACAGTGCAAGGTTTCATGGCATTCAGGATTAGACTGCAGGGAGTTTAACAACTTGAAGCAGGATGAGAGAGGGAGAGAAGATCTGCAGGTGCTGGATCTTGCTAAGAACAAAAGTTGGAGAAGATGTCCAAAATGCATATTCTATGTGGAAAAAACTGAAGGATGTTCACATATTTCTTGCAGATGTGGTCAGGAATTTTGTTATGTCTGTGGATCCTCTTGGTCTACAGACCATGTATGTCAAGTGAACAACTCTTAG 954 0.4015 MEGTSSASSSKNFPSTAQDHHFVDDFYFSALLDAEEIFPISDEKYAEELQLQEALYSSTTSRVVKEVIQMDVDVDVDVDVDVDVDEEDEGDLVLRTLKGKQKETGETSHTCTYCEICMDAKSGEEMFRNQNCSHLYCDDCIGRHVAAKIQESILMVKCPEPKCREFIEPHHCRSIIPKEVFDRWEDALCEIVVLGSEKFYCPFEDCSAMMICDADQDITVSECPHCNRLFCAQCKVSWHSGLDCREFNNLKQDERGREDLQVLDLAKNKSWRRCPKCIFYVEKTEGCSHISCRCGQEFCYVCGSSWSTDHVCQVNNS* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1292 317 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 313 IPR031127 GO:0004842|GO:0016567
Pvu10g1292 317 SUPERFAMILY RING/U-box 255 312 - -
Pvu10g1292 317 Gene3D - 242 317 - -
Pvu10g1292 317 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 313 - -
Pvu10g1292 317 ProSiteProfiles TRIAD supradomain profile. 110 317 IPR044066 -
Pvu10g1292 317 SUPERFAMILY RING/U-box 111 191 - -
Pvu10g1292 317 Pfam IBR domain, a half RING-finger domain 265 311 IPR002867 -
Pvu10g1292 317 Pfam IBR domain, a half RING-finger domain 196 244 IPR002867 -
Pvu10g1292 317 SUPERFAMILY RING/U-box 186 248 - -
Pvu10g1292 317 SMART ibrneu5 254 312 IPR002867 -
Pvu10g1292 317 SMART ibrneu5 182 244 IPR002867 -
Pvu10g1292 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 193 IPR013083 -
Pvu10g1292 317 ProSitePatterns Zinc finger RING-type signature. 132 141 IPR017907 -
Pvu10g1292 317 ProSiteProfiles Zinc finger RING-type profile. 114 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1292 Pvu-Chr10 39412060 39413149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1292 114 304 C3H Transcription Factor Family AT2G19610 27.885 1.45e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1292 K11975 - gmx:100815626 412.149